Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 SNORA43.3-201ENST00000517240 103 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.28□□□□□ -1.56
FOXA1P55317 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 MRPS21P7-201ENST00000566937 238 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.28□□□□□ -1.56
FOXA1P55317 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 AC244107.2-201ENST00000611773 76 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 uc_338.7-201ENST00000621834 124 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AC008691.1-209ENST00000642094 814 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.28□□□□□ -1.56
FOXA1P55317 AC114786.1-201ENST00000512892 1415 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.28□□□□□ -1.56
FOXA1P55317 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 AL121839.2-201ENST00000565058 6943 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXA1P55317 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXA1P55317 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXA1P55317 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 DNAJA1P5-201ENST00000440278 943 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 PCNPP2-201ENST00000441651 455 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 REG1CP-206ENST00000447469 496 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 AL450023.1-201ENST00000450868 751 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 CBX1P2-201ENST00000453841 458 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.27□□□□□ -1.57
FOXA1P55317 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 IMPA1P1-201ENST00000510718 842 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 RNA5SP271-201ENST00000516700 88 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 CDC42P3-201ENST00000518493 633 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXA1P55317 BCAS2P1-201ENST00000528022 632 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 AC024405.1-201ENST00000532521 1042 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXA1P55317 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXA1P55317 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXA1P55317 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXA1P55317 AC090286.3-201ENST00000573133 187 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXA1P55317 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 AC067773.1-201ENST00000603284 1094 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 AC099654.6-201ENST00000636487 512 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 AP000473.2-201ENST00000602659 1537 ntBASIC5.27□□□□□ -1.57
FOXA1P55317 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXA1P55317 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
FOXA1P55317 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
FOXA1P55317 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.27□□□□□ -1.57
FOXA1P55317 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXA1P55317 YES1P1-201ENST00000418510 1628 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
FOXA1P55317 AC091305.2-201ENST00000624049 1576 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 AC106872.5-201ENST00000508856 1416 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
FOXA1P55317 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 RNA5SP187-201ENST00000384400 119 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXA1P55317 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 AL133173.1-201ENST00000423458 397 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXA1P55317 AC017019.1-201ENST00000426129 261 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 AC115283.1-201ENST00000427353 400 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.26□□□□□ -1.57
FOXA1P55317 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXA1P55317 RPS10P18-201ENST00000442662 495 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.26□□□□□ -1.57
FOXA1P55317 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXA1P55317 AC090602.1-201ENST00000469695 252 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 AC109464.1-201ENST00000511091 819 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms