Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.86□□□□□ -1.47
COL4A4P53420 AP001267.4-201ENST00000602598 545 ntBASIC5.86□□□□□ -1.47
COL4A4P53420 AL513327.3-201ENST00000602618 469 ntBASIC5.86□□□□□ -1.47
COL4A4P53420 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 OR9K1P-202ENST00000641111 3217 ntBASIC5.86□□□□□ -1.47
COL4A4P53420 AC123769.2-201ENST00000624332 5984 ntBASIC5.86□□□□□ -1.47
COL4A4P53420 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC5.86□□□□□ -1.47
COL4A4P53420 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 AC126755.2-208ENST00000327792 462 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 AC138969.1-213ENST00000331436 462 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL4A4P53420 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 TPT1P13-201ENST00000449760 499 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 SNORD125-201ENST00000459538 96 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.85□□□□□ -1.47
COL4A4P53420 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.85□□□□□ -1.47
COL4A4P53420 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.85□□□□□ -1.47
COL4A4P53420 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL4A4P53420 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.85□□□□□ -1.47
COL4A4P53420 EPS15P1-202ENST00000459691 2071 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 PWAR1-201ENST00000624188 2414 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 Z95114.1-201ENST00000624264 14574 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 MIR551A-201ENST00000385042 96 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 AL356967.1-201ENST00000406305 431 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 AC245028.1-201ENST00000423259 256 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.85□□□□□ -1.47
COL4A4P53420 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 RPS23P2-201ENST00000463671 415 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.85□□□□□ -1.47
COL4A4P53420 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.85□□□□□ -1.47
COL4A4P53420 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 AC091905.4-201ENST00000623432 202 ntBASIC5.85□□□□□ -1.47
COL4A4P53420 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.85□□□□□ -1.47
COL4A4P53420 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL4A4P53420 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL4A4P53420 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL4A4P53420 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
COL4A4P53420 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
COL4A4P53420 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 INTS6P1-201ENST00000504674 2530 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.84□□□□□ -1.47
COL4A4P53420 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.84□□□□□ -1.47
COL4A4P53420 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
COL4A4P53420 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.84□□□□□ -1.47
COL4A4P53420 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
COL4A4P53420 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
COL4A4P53420 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
COL4A4P53420 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 AL133388.1-201ENST00000404509 287 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 AL590139.1-201ENST00000416267 400 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 AC019050.1-201ENST00000418508 492 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 BX276092.6-201ENST00000430476 250 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.84□□□□□ -1.47
COL4A4P53420 AL672138.1-201ENST00000450604 1015 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 BX276092.8-201ENST00000455722 250 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 RPS29P33-201ENST00000456717 146 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 AC002075.1-201ENST00000457396 676 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 snoU13.20-201ENST00000459180 104 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL4A4P53420 STRADBP1-201ENST00000478954 1281 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.84□□□□□ -1.47
COL4A4P53420 AC092490.3-201ENST00000545370 572 ntBASIC5.84□□□□□ -1.47
COL4A4P53420 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms