Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.34□□□□□ -1.39
BDNFP23560 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.34□□□□□ -1.39
BDNFP23560 CASP1-216ENST00000534497 825 ntTSL 5 BASIC6.34□□□□□ -1.39
BDNFP23560 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.34□□□□□ -1.39
BDNFP23560 AC067805.1-201ENST00000559344 470 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AC092121.1-201ENST00000569452 202 ntBASIC6.34□□□□□ -1.39
BDNFP23560 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
BDNFP23560 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.34□□□□□ -1.39
BDNFP23560 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.34□□□□□ -1.39
BDNFP23560 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC6.34□□□□□ -1.39
BDNFP23560 AC100767.2-201ENST00000604840 693 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AL137246.2-201ENST00000613439 662 ntBASIC6.34□□□□□ -1.39
BDNFP23560 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.34□□□□□ -1.39
BDNFP23560 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
BDNFP23560 AC005332.5-201ENST00000591222 2919 ntBASIC6.34□□□□□ -1.39
BDNFP23560 AL121768.1-201ENST00000613917 2544 ntBASIC6.34□□□□□ -1.39
BDNFP23560 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.34□□□□□ -1.4
BDNFP23560 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.34□□□□□ -1.4
BDNFP23560 AC016583.1-201ENST00000624221 2431 ntBASIC6.34□□□□□ -1.4
BDNFP23560 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
BDNFP23560 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
BDNFP23560 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
BDNFP23560 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 SELENOWP1-201ENST00000322792 252 ntBASIC6.33□□□□□ -1.4
BDNFP23560 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 RNA5SP510-201ENST00000364697 99 ntBASIC6.33□□□□□ -1.4
BDNFP23560 RNA5SP122-201ENST00000384457 108 ntBASIC6.33□□□□□ -1.4
BDNFP23560 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 MIR1203-201ENST00000408812 85 ntBASIC6.33□□□□□ -1.4
BDNFP23560 GNG5P5-201ENST00000420444 220 ntBASIC6.33□□□□□ -1.4
BDNFP23560 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.33□□□□□ -1.4
BDNFP23560 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 TUBB4BP6-201ENST00000437576 479 ntBASIC6.33□□□□□ -1.4
BDNFP23560 BMS1P10-201ENST00000443754 1120 ntBASIC6.33□□□□□ -1.4
BDNFP23560 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.33□□□□□ -1.4
BDNFP23560 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.33□□□□□ -1.4
BDNFP23560 RPL23AP40-201ENST00000487630 390 ntBASIC6.33□□□□□ -1.4
BDNFP23560 CCDC11P1-201ENST00000503137 1162 ntBASIC6.33□□□□□ -1.4
BDNFP23560 AC008629.2-201ENST00000503783 483 ntBASIC6.33□□□□□ -1.4
BDNFP23560 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.33□□□□□ -1.4
BDNFP23560 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.33□□□□□ -1.4
BDNFP23560 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.33□□□□□ -1.4
BDNFP23560 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC6.33□□□□□ -1.4
BDNFP23560 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC6.33□□□□□ -1.4
BDNFP23560 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.33□□□□□ -1.4
BDNFP23560 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC6.33□□□□□ -1.4
BDNFP23560 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.33□□□□□ -1.4
BDNFP23560 AC027243.2-201ENST00000602530 724 ntBASIC6.33□□□□□ -1.4
BDNFP23560 AC009237.12-201ENST00000604755 742 ntBASIC6.33□□□□□ -1.4
BDNFP23560 AL136131.3-201ENST00000607600 188 ntBASIC6.33□□□□□ -1.4
BDNFP23560 AL138960.1-201ENST00000613838 513 ntBASIC6.33□□□□□ -1.4
BDNFP23560 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.33□□□□□ -1.4
BDNFP23560 RPL23AP61-201ENST00000623642 466 ntBASIC6.33□□□□□ -1.4
BDNFP23560 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.33□□□□□ -1.4
BDNFP23560 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.33□□□□□ -1.4
BDNFP23560 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
BDNFP23560 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
BDNFP23560 AC010329.2-201ENST00000595195 2737 ntBASIC6.33□□□□□ -1.4
BDNFP23560 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
BDNFP23560 AC027088.4-201ENST00000611559 1947 ntBASIC6.33□□□□□ -1.4
BDNFP23560 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.32□□□□□ -1.4
BDNFP23560 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BDNFP23560 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BDNFP23560 AC007996.1-201ENST00000620414 2821 ntBASIC6.32□□□□□ -1.4
BDNFP23560 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.32□□□□□ -1.4
BDNFP23560 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.32□□□□□ -1.4
BDNFP23560 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.32□□□□□ -1.4
BDNFP23560 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
BDNFP23560 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
BDNFP23560 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BDNFP23560 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
BDNFP23560 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
BDNFP23560 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BDNFP23560 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
BDNFP23560 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
BDNFP23560 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BDNFP23560 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
BDNFP23560 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
BDNFP23560 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
BDNFP23560 AL096800.1-201ENST00000405326 893 ntBASIC6.32□□□□□ -1.4
BDNFP23560 AL589655.1-201ENST00000405398 482 ntBASIC6.32□□□□□ -1.4
BDNFP23560 RPL26P37-201ENST00000411983 438 ntBASIC6.32□□□□□ -1.4
BDNFP23560 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC6.32□□□□□ -1.4
BDNFP23560 KIF4CP-201ENST00000422742 1279 ntBASIC6.32□□□□□ -1.4
BDNFP23560 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms