Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC4.69□□□□□ -1.66
SDCBPO00560 RN7SL188P-201ENST00000469842 285 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.69□□□□□ -1.66
SDCBPO00560 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.69□□□□□ -1.66
SDCBPO00560 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.69□□□□□ -1.66
SDCBPO00560 SNORA70.11-201ENST00000515987 138 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 SNORA70.13-201ENST00000516116 138 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC4.69□□□□□ -1.66
SDCBPO00560 TRIM51DP-201ENST00000529746 596 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SDCBPO00560 AL359219.2-201ENST00000555184 348 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC4.69□□□□□ -1.66
SDCBPO00560 MIR7853-201ENST00000584820 132 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC4.69□□□□□ -1.66
SDCBPO00560 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC4.69□□□□□ -1.66
SDCBPO00560 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC4.69□□□□□ -1.66
SDCBPO00560 AC092944.2-201ENST00000605443 889 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDCBPO00560 Six3os1_2.1-201ENST00000616963 217 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.69□□□□□ -1.66
SDCBPO00560 AC026367.3-201ENST00000619032 590 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SDCBPO00560 OR8G3P-202ENST00000641572 1255 ntBASIC4.69□□□□□ -1.66
SDCBPO00560 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDCBPO00560 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDCBPO00560 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC4.69□□□□□ -1.66
SDCBPO00560 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC4.69□□□□□ -1.66
SDCBPO00560 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SDCBPO00560 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDCBPO00560 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
SDCBPO00560 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDCBPO00560 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.69□□□□□ -1.66
SDCBPO00560 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SDCBPO00560 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC4.68□□□□□ -1.66
SDCBPO00560 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 Z95331.1-201ENST00000623075 23112 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
SDCBPO00560 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SDCBPO00560 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 VN1R12P-201ENST00000403778 876 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 RPSAP35-201ENST00000413753 818 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC4.68□□□□□ -1.66
SDCBPO00560 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC4.68□□□□□ -1.66
SDCBPO00560 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC4.68□□□□□ -1.66
SDCBPO00560 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC4.68□□□□□ -1.66
SDCBPO00560 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC4.68□□□□□ -1.66
SDCBPO00560 AC022215.1-201ENST00000481770 362 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC4.68□□□□□ -1.66
SDCBPO00560 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.68□□□□□ -1.66
SDCBPO00560 IGLV3-24-201ENST00000517477 197 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC4.68□□□□□ -1.66
SDCBPO00560 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC4.68□□□□□ -1.66
SDCBPO00560 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.68□□□□□ -1.66
SDCBPO00560 MIR4271-201ENST00000582451 67 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 AC016590.3-201ENST00000611171 753 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 MIR6071-201ENST00000616741 78 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC4.68□□□□□ -1.66
SDCBPO00560 AC119674.1-217ENST00000641942 1086 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SDCBPO00560 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC4.68□□□□□ -1.66
SDCBPO00560 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SDCBPO00560 AL450345.1-202ENST00000605741 3881 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SDCBPO00560 AL078621.3-201ENST00000623707 2042 ntBASIC4.68□□□□□ -1.66
SDCBPO00560 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SDCBPO00560 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC4.68□□□□□ -1.66
SDCBPO00560 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
SDCBPO00560 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SDCBPO00560 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SDCBPO00560 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.67□□□□□ -1.66
SDCBPO00560 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC4.67□□□□□ -1.66
SDCBPO00560 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SDCBPO00560 AL159987.1-201ENST00000347911 293 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC4.67□□□□□ -1.66
SDCBPO00560 AC117434.1-201ENST00000419971 836 ntBASIC4.67□□□□□ -1.66
SDCBPO00560 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms