Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RSU1P1-201ENST00000453416 441 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 KCTD9P4-201ENST00000526766 1166 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AC007346.2-201ENST00000564816 892 ntBASIC5.23□□□□□ -1.57
VPS13AQ96RL7 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS13AQ96RL7 U3.3-201ENST00000362986 216 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 NUDT19P3-201ENST00000404698 555 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC009237.10-201ENST00000414112 510 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC009237.5-201ENST00000414271 501 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 OR13C1P-201ENST00000457612 963 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC013356.1-201ENST00000489027 564 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 ELP2-203ENST00000358232 8459 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 CENPIP1-201ENST00000425713 902 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC010618.1-201ENST00000469924 477 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC090058.1-201ENST00000498788 435 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AL121594.2-201ENST00000541658 472 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC093227.2-201ENST00000589357 285 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC011944.2-201ENST00000624440 683 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 MAPK10-270ENST00000641102 3538 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 RNU4-39P-201ENST00000362455 127 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 RNU4-25P-201ENST00000410569 230 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 RAD23BP1-201ENST00000421404 1227 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC083829.1-201ENST00000503756 657 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC133555.2-201ENST00000550213 292 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AC004890.3-201ENST00000605566 1095 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 AL445647.2-201ENST00000615170 130 ntBASIC5.22□□□□□ -1.57
VPS13AQ96RL7 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS13AQ96RL7 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
VPS13AQ96RL7 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.21□□□□□ -1.57
VPS13AQ96RL7 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
VPS13AQ96RL7 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.57
VPS13AQ96RL7 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.57
VPS13AQ96RL7 AC010928.1-201ENST00000592477 1447 ntBASIC5.21□□□□□ -1.57
VPS13AQ96RL7 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
VPS13AQ96RL7 HMGB3P7-201ENST00000400214 611 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 EI24P4-201ENST00000423683 1078 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 snoU13.1-201ENST00000459157 104 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 AC074255.1-201ENST00000511259 501 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 AC027279.1-201ENST00000568885 4284 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 SNORA70F-201ENST00000384142 135 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 TMEM183AP1-205ENST00000432739 290 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 BZW1P1-201ENST00000454901 1240 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 IGKV2D-10-201ENST00000520194 281 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 BNIP3P11-201ENST00000603878 563 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 AC006338.2-201ENST00000616864 791 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 AC009948.3-201ENST00000603415 1798 ntBASIC5.21□□□□□ -1.58
VPS13AQ96RL7 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS13AQ96RL7 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms