Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC138969.1-213ENST00000331436 462 ntBASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 SNORA70.9-201ENST00000384370 135 ntBASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 RPL12P39-201ENST00000455456 496 ntBASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 RNU6ATAC24P-201ENST00000516811 135 ntBASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 RAB9BP1-201ENST00000519581 626 ntBASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 AC013701.1-201ENST00000522657 465 ntBASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 AP003789.1-201ENST00000617737 605 ntBASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 AC073365.1-203ENST00000641055 1992 ntBASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 AC018765.1-201ENST00000623357 3446 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 RN7SKP95-201ENST00000362860 303 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 TRY2P-201ENST00000448860 689 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 RN7SL205P-201ENST00000490174 284 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 RPS17P5-201ENST00000498293 408 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 MIR3934-201ENST00000579806 107 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 RN7SL52P-201ENST00000584271 284 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 RN7SL722P-201ENST00000617780 284 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 RN7SL565P-201ENST00000618246 284 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AC022164.1-201ENST00000568767 2673 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 LINC02035-201ENST00000610128 5476 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AC007161.1-204ENST00000423039 460 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AK3P5-201ENST00000432033 519 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AC008072.1-201ENST00000434254 824 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 MAPK10-350ENST00000641777 965 ntBASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CCDC88AQ3V6T2 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AP002991.2-201ENST00000623807 2801 ntBASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 RNA5SP326-201ENST00000363209 110 ntBASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 RPS3AP53-201ENST00000454716 778 ntBASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AC011840.5-201ENST00000582125 771 ntBASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AC010245.2-201ENST00000606908 1167 ntBASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 AL133481.2-203ENST00000607558 139 ntBASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
CCDC88AQ3V6T2 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 183.6 ms