Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC6.15□□□□□ -1.42
HDAC4P56524 AL157777.1-201ENST00000468100 304 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6.15□□□□□ -1.42
HDAC4P56524 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC6.15□□□□□ -1.42
HDAC4P56524 SUMO2P4-201ENST00000504193 276 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 SCARNA18.1-201ENST00000516330 83 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 MIR2117-201ENST00000516780 80 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC6.15□□□□□ -1.42
HDAC4P56524 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.15□□□□□ -1.42
HDAC4P56524 AC090424.1-201ENST00000535243 736 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.15□□□□□ -1.42
HDAC4P56524 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC6.15□□□□□ -1.42
HDAC4P56524 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.15□□□□□ -1.42
HDAC4P56524 AC007346.2-201ENST00000564816 892 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 GARSP1-201ENST00000570895 719 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.15□□□□□ -1.42
HDAC4P56524 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.15□□□□□ -1.42
HDAC4P56524 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC6.15□□□□□ -1.42
HDAC4P56524 AL445670.1-201ENST00000618889 801 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 AC024884.1-201ENST00000620583 399 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 AC022400.9-201ENST00000623633 273 ntBASIC6.15□□□□□ -1.42
HDAC4P56524 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
HDAC4P56524 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.42
HDAC4P56524 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
HDAC4P56524 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
HDAC4P56524 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.15□□□□□ -1.43
HDAC4P56524 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
HDAC4P56524 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.15□□□□□ -1.43
HDAC4P56524 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.15□□□□□ -1.43
HDAC4P56524 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.15□□□□□ -1.43
HDAC4P56524 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.43
HDAC4P56524 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HDAC4P56524 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HDAC4P56524 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.14□□□□□ -1.43
HDAC4P56524 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 RNA5SP273-201ENST00000362484 113 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 AC016739.1-201ENST00000405359 345 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC110602.1-201ENST00000437414 318 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 VN1R110P-201ENST00000438988 971 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.14□□□□□ -1.43
HDAC4P56524 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 RN7SL214P-201ENST00000487317 265 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 AP003396.4-201ENST00000527574 265 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.14□□□□□ -1.43
HDAC4P56524 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC090826.1-203ENST00000569235 490 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 MIR4776-2-201ENST00000580204 80 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.14□□□□□ -1.43
HDAC4P56524 AP000894.4-201ENST00000610185 483 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 Z95327.3-201ENST00000610385 572 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.14□□□□□ -1.43
HDAC4P56524 MIR6793-201ENST00000612376 63 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 AC091948.2-201ENST00000636510 279 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 OR11H2-202ENST00000641517 1085 ntBASIC6.14□□□□□ -1.43
HDAC4P56524 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
HDAC4P56524 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
HDAC4P56524 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HDAC4P56524 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HDAC4P56524 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.13□□□□□ -1.43
HDAC4P56524 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
HDAC4P56524 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HDAC4P56524 DDX18P6-201ENST00000450119 1997 ntBASIC6.13□□□□□ -1.43
HDAC4P56524 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.13□□□□□ -1.43
HDAC4P56524 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
HDAC4P56524 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
HDAC4P56524 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.13□□□□□ -1.43
HDAC4P56524 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.13□□□□□ -1.43
HDAC4P56524 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HDAC4P56524 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
HDAC4P56524 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms