Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RN7SKP74-201ENST00000362849 309 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA3P55318 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
FOXA3P55318 RPL21P67-201ENST00000402896 478 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 PRELID1P1-201ENST00000403549 660 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 MIR1266-201ENST00000408125 84 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA3P55318 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA3P55318 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA3P55318 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 RPL19P16-201ENST00000433839 588 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 ARMC4P1-201ENST00000438905 707 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC234771.4-201ENST00000441416 730 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 GTF3AP5-201ENST00000442645 697 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC073909.1-201ENST00000447112 999 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 AP003385.3-201ENST00000472498 287 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA3P55318 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 RPS24P16-201ENST00000497294 392 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 AC114324.2-202ENST00000503812 134 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA3P55318 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA3P55318 IMPA1P1-201ENST00000510718 842 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA3P55318 AP000859.1-201ENST00000525536 307 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 AC130364.2-201ENST00000528639 604 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC024267.2-201ENST00000582737 417 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC4.14□□□□□ -1.75
FOXA3P55318 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC4.14□□□□□ -1.75
FOXA3P55318 AC073333.2-201ENST00000603589 769 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 AL080312.2-201ENST00000613001 630 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 AL512652.1-201ENST00000619006 500 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC4.14□□□□□ -1.75
FOXA3P55318 PSG10P-201ENST00000501199 1500 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.14□□□□□ -1.75
FOXA3P55318 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
FOXA3P55318 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
FOXA3P55318 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 AC114947.2-201ENST00000565748 2125 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXA3P55318 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
FOXA3P55318 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
FOXA3P55318 AL138820.1-201ENST00000617901 5305 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXA3P55318 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXA3P55318 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
FOXA3P55318 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA3P55318 CLCN3P1-201ENST00000423965 1017 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
FOXA3P55318 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.13□□□□□ -1.75
FOXA3P55318 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.13□□□□□ -1.75
FOXA3P55318 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA3P55318 AC023141.3-201ENST00000436698 278 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA3P55318 CYCSP24-201ENST00000445119 316 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC4.13□□□□□ -1.75
FOXA3P55318 NPM1P9-201ENST00000453156 844 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA3P55318 RN7SL273P-201ENST00000481561 299 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA3P55318 CDC42P3-201ENST00000518493 633 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA3P55318 AP006245.2-201ENST00000522004 300 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 IGLV3-30-201ENST00000524362 298 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 OR10D4P-201ENST00000525892 951 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 TRIM51DP-201ENST00000529746 596 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 AC006349.1-201ENST00000555526 235 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 AC127381.1-201ENST00000555979 939 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC4.13□□□□□ -1.75
FOXA3P55318 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
FOXA3P55318 DPRXP4-201ENST00000578053 568 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 MIR4311-201ENST00000580794 100 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 MIR4701-201ENST00000583094 63 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC4.13□□□□□ -1.75
FOXA3P55318 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA3P55318 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXA3P55318 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXA3P55318 AL451049.1-201ENST00000608672 497 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 AL139407.1-201ENST00000613826 1175 ntBASIC4.13□□□□□ -1.75
FOXA3P55318 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms