Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.55□□□□□ -1.52
SHMT2P34897 RPS23P6-201ENST00000466136 431 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 AC087672.1-201ENST00000479876 766 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.55□□□□□ -1.52
SHMT2P34897 RPL7P51-201ENST00000490532 749 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 RNU6-615P-201ENST00000516065 106 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.55□□□□□ -1.52
SHMT2P34897 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.55□□□□□ -1.52
SHMT2P34897 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.55□□□□□ -1.52
SHMT2P34897 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.55□□□□□ -1.52
SHMT2P34897 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.55□□□□□ -1.52
SHMT2P34897 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.55□□□□□ -1.52
SHMT2P34897 AC103703.1-201ENST00000634783 663 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.55□□□□□ -1.52
SHMT2P34897 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.55□□□□□ -1.52
SHMT2P34897 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SHMT2P34897 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SHMT2P34897 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.55□□□□□ -1.52
SHMT2P34897 RNF19BPY-201ENST00000458209 1550 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 UGT2B24P-201ENST00000514441 1597 ntBASIC5.55□□□□□ -1.52
SHMT2P34897 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
SHMT2P34897 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SHMT2P34897 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.54□□□□□ -1.52
SHMT2P34897 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 AP005435.3-201ENST00000531260 3198 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.54□□□□□ -1.52
SHMT2P34897 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SHMT2P34897 SNORA64.1-201ENST00000362600 132 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.54□□□□□ -1.52
SHMT2P34897 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SHMT2P34897 SNORA5.1-201ENST00000384275 131 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 AC087752.1-201ENST00000391360 558 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.54□□□□□ -1.52
SHMT2P34897 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SHMT2P34897 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.54□□□□□ -1.52
SHMT2P34897 AC242426.1-201ENST00000435270 960 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 RPL36AP39-201ENST00000445859 318 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 RPS23P9-201ENST00000448848 438 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 SETP20-201ENST00000457046 852 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.54□□□□□ -1.52
SHMT2P34897 AC073610.1-201ENST00000489971 396 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.54□□□□□ -1.52
SHMT2P34897 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.54□□□□□ -1.52
SHMT2P34897 DPPA2P4-201ENST00000563717 878 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 AC019322.1-201ENST00000571869 389 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.54□□□□□ -1.52
SHMT2P34897 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.54□□□□□ -1.52
SHMT2P34897 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 LSM1P2-201ENST00000604911 322 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 KARSP1-201ENST00000451871 1752 ntBASIC5.54□□□□□ -1.52
SHMT2P34897 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.54□□□□□ -1.52
SHMT2P34897 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
SHMT2P34897 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SHMT2P34897 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.53□□□□□ -1.52
SHMT2P34897 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
SHMT2P34897 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 AC012078.1-201ENST00000405035 1646 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AL137058.3-201ENST00000624531 3099 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC5.53□□□□□ -1.52
SHMT2P34897 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SHMT2P34897 RNA5SP46-201ENST00000362370 120 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 RN7SKP185-201ENST00000362813 326 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms