Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC068631.1-229ENST00000599314 739 ntTSL 5 BASIC7.16□□□□□ -1.26
MSX1P28360 AL596327.1-201ENST00000603629 213 ntBASIC7.16□□□□□ -1.26
MSX1P28360 AC140658.6-201ENST00000603958 201 ntBASIC7.16□□□□□ -1.26
MSX1P28360 RNU6ATAC35P-201ENST00000609276 444 ntBASIC7.16□□□□□ -1.26
MSX1P28360 MIR6745-201ENST00000612694 127 ntBASIC7.16□□□□□ -1.26
MSX1P28360 SLC20A1P2-201ENST00000618036 966 ntBASIC7.16□□□□□ -1.26
MSX1P28360 DLST-216ENST00000626051 252 ntTSL 5 BASIC7.16□□□□□ -1.26
MSX1P28360 AC093591.3-201ENST00000634516 308 ntBASIC7.16□□□□□ -1.26
MSX1P28360 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 NUMB-205ENST00000544991 2757 ntTSL 5 BASIC7.16□□□□□ -1.26
MSX1P28360 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC7.16□□□□□ -1.26
MSX1P28360 CDK15-203ENST00000434439 2240 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 ZNF189-202ENST00000339664 3021 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 CCDC66-203ENST00000394672 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 ZNF438-202ENST00000361310 3144 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 METTL2A-204ENST00000616852 3150 ntTSL 2 BASIC7.16□□□□□ -1.26
MSX1P28360 HIST1H2BN-203ENST00000606613 4137 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
MSX1P28360 BMX-203ENST00000357607 2598 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
MSX1P28360 TMCC1-AS1-204ENST00000605830 3496 ntTSL 2 BASIC7.15□□□□□ -1.26
MSX1P28360 CACNB4-263ENST00000637779 1772 ntTSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC7.15□□□□□ -1.26
MSX1P28360 MAGEB18-201ENST00000325250 1811 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 ZNF33BP1-201ENST00000452497 1834 ntBASIC7.15□□□□□ -1.26
MSX1P28360 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 PPP2R5C-218ENST00000556260 2013 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 GTF2IP1-202ENST00000614592 2047 ntBASIC7.15□□□□□ -1.26
MSX1P28360 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 BAAT-201ENST00000259407 3377 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 ARHGAP1-201ENST00000311956 3375 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC7.15□□□□□ -1.26
MSX1P28360 GDNF-208ENST00000620847 3638 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 Y_RNA.58-201ENST00000362807 102 ntBASIC7.15□□□□□ -1.26
MSX1P28360 Y_RNA.138-201ENST00000363462 102 ntBASIC7.15□□□□□ -1.26
MSX1P28360 Y_RNA.154-201ENST00000363624 102 ntBASIC7.15□□□□□ -1.26
MSX1P28360 RNY3P1-201ENST00000365085 102 ntBASIC7.15□□□□□ -1.26
MSX1P28360 RNY3-201ENST00000365484 102 ntBASIC7.15□□□□□ -1.26
MSX1P28360 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 Y_RNA.490-201ENST00000384413 102 ntBASIC7.15□□□□□ -1.26
MSX1P28360 RNA5SP23-201ENST00000391006 105 ntBASIC7.15□□□□□ -1.26
MSX1P28360 PHBP1-201ENST00000392260 808 ntBASIC7.15□□□□□ -1.26
MSX1P28360 MS4A3-203ENST00000395032 867 ntTSL 2 BASIC7.15□□□□□ -1.26
MSX1P28360 NACAP7-201ENST00000407371 609 ntBASIC7.15□□□□□ -1.26
MSX1P28360 RPS3AP3-201ENST00000411933 242 ntBASIC7.15□□□□□ -1.26
MSX1P28360 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 YWHAZP3-201ENST00000415292 738 ntBASIC7.15□□□□□ -1.26
MSX1P28360 GH2-202ENST00000423893 819 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 FDPSP1-201ENST00000424976 1071 ntBASIC7.15□□□□□ -1.26
MSX1P28360 CHCHD3P1-201ENST00000425516 676 ntBASIC7.15□□□□□ -1.26
MSX1P28360 SNX18P9-201ENST00000440580 835 ntBASIC7.15□□□□□ -1.26
MSX1P28360 Z80107.2-201ENST00000445127 392 ntBASIC7.15□□□□□ -1.26
MSX1P28360 MED28P8-201ENST00000454831 521 ntBASIC7.15□□□□□ -1.26
MSX1P28360 GH2-204ENST00000456543 794 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 AC234782.3-201ENST00000461229 433 ntBASIC7.15□□□□□ -1.26
MSX1P28360 AL928654.1-201ENST00000476081 354 ntBASIC7.15□□□□□ -1.26
MSX1P28360 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 RPL39P36-201ENST00000490784 156 ntBASIC7.15□□□□□ -1.26
MSX1P28360 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 RPL22-208ENST00000497965 786 ntTSL 2 BASIC7.15□□□□□ -1.26
MSX1P28360 AC108078.3-201ENST00000502633 489 ntBASIC7.15□□□□□ -1.26
MSX1P28360 AC106822.1-201ENST00000502647 526 ntBASIC7.15□□□□□ -1.26
MSX1P28360 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 AP002026.1-204ENST00000506454 749 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 snoU109.5-201ENST00000516231 132 ntBASIC7.15□□□□□ -1.26
MSX1P28360 AP000880.1-201ENST00000529416 743 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 OR6M3P-201ENST00000531567 700 ntBASIC7.15□□□□□ -1.26
MSX1P28360 ACER3-213ENST00000533873 929 ntTSL 2 BASIC7.15□□□□□ -1.26
MSX1P28360 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC7.15□□□□□ -1.26
MSX1P28360 AC093012.1-202ENST00000549403 582 ntBASIC7.15□□□□□ -1.26
MSX1P28360 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC7.15□□□□□ -1.26
MSX1P28360 MIR744-201ENST00000578242 98 ntBASIC7.15□□□□□ -1.26
MSX1P28360 RN7SL786P-201ENST00000579130 298 ntBASIC7.15□□□□□ -1.26
MSX1P28360 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 AC093484.4-201ENST00000583934 461 ntTSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 FXYD1-205ENST00000588607 619 ntAPPRIS P1 TSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 RNU6-88P-201ENST00000606801 100 ntBASIC7.15□□□□□ -1.26
MSX1P28360 OR6L2P-201ENST00000608207 925 ntBASIC7.15□□□□□ -1.26
MSX1P28360 Metazoa_SRP.99-201ENST00000621370 254 ntBASIC7.15□□□□□ -1.26
MSX1P28360 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 HMGXB4-201ENST00000216106 4047 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
MSX1P28360 AGBL4-203ENST00000371838 1353 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
MSX1P28360 C1D-202ENST00000407324 1379 ntTSL 3 BASIC7.15□□□□□ -1.26
MSX1P28360 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.27
MSX1P28360 OAS2-207ENST00000620097 2908 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.27
MSX1P28360 Z83820.1-201ENST00000456978 1499 ntBASIC7.15□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms