Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.71□□□□□ -1.5
HMGA1P17096 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGA1P17096 GSTM5P1-201ENST00000434751 660 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 GAPDHP58-201ENST00000438477 1006 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGA1P17096 SNORD125-201ENST00000459538 96 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 RPL7P6-201ENST00000480903 738 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 GAPDHP62-201ENST00000515313 990 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 RN7SKP67-201ENST00000515905 235 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGA1P17096 HMGB1P40-201ENST00000525121 540 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.71□□□□□ -1.5
HMGA1P17096 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HMGA1P17096 AC009962.1-201ENST00000567327 3813 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.71□□□□□ -1.5
HMGA1P17096 AC119501.1-201ENST00000603646 475 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 AC092944.2-201ENST00000605443 889 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 AC126915.2-201ENST00000610957 190 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 MIR7155-201ENST00000615925 56 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HMGA1P17096 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.71□□□□□ -1.5
HMGA1P17096 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGA1P17096 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGA1P17096 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HMGA1P17096 AC110716.2-201ENST00000563865 3945 ntBASIC5.71□□□□□ -1.5
HMGA1P17096 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HMGA1P17096 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HMGA1P17096 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
HMGA1P17096 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HMGA1P17096 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HMGA1P17096 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGA1P17096 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HMGA1P17096 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
HMGA1P17096 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HMGA1P17096 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HMGA1P17096 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HMGA1P17096 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGA1P17096 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGA1P17096 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGA1P17096 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HMGA1P17096 AC073342.2-201ENST00000595842 1800 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HMGA1P17096 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HMGA1P17096 U8.4-201ENST00000363626 134 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGA1P17096 OR10T1P-201ENST00000424327 947 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 RIMKLBP2-201ENST00000424737 654 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 FAM96AP1-201ENST00000430879 482 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.7□□□□□ -1.5
HMGA1P17096 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HMGA1P17096 AL672138.1-201ENST00000450604 1015 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 AURKAPS1-201ENST00000451805 1212 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGA1P17096 AC093270.2-201ENST00000486157 792 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.7□□□□□ -1.5
HMGA1P17096 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGA1P17096 SCARNA16.4-201ENST00000516956 187 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 OR4A6P-201ENST00000534364 970 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
HMGA1P17096 OR11J2P-201ENST00000555298 907 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 RPL10P14-201ENST00000565265 298 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 AC106730.2-201ENST00000566641 540 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGA1P17096 AL139407.1-201ENST00000613826 1175 ntBASIC5.7□□□□□ -1.5
HMGA1P17096 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGA1P17096 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HMGA1P17096 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
HMGA1P17096 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGA1P17096 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGA1P17096 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
HMGA1P17096 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HMGA1P17096 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HMGA1P17096 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
HMGA1P17096 MRRFP1-201ENST00000435941 1675 ntBASIC5.69□□□□□ -1.5
HMGA1P17096 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
HMGA1P17096 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HMGA1P17096 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HMGA1P17096 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
HMGA1P17096 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HMGA1P17096 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
HMGA1P17096 SNORA67-201ENST00000384423 137 ntBASIC5.69□□□□□ -1.5
HMGA1P17096 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HMGA1P17096 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.69□□□□□ -1.5
HMGA1P17096 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.69□□□□□ -1.5
HMGA1P17096 BX679664.2-201ENST00000439282 283 ntBASIC5.69□□□□□ -1.5
HMGA1P17096 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.69□□□□□ -1.5
HMGA1P17096 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HMGA1P17096 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.69□□□□□ -1.5
HMGA1P17096 AP004607.2-201ENST00000533949 322 ntBASIC5.69□□□□□ -1.5
HMGA1P17096 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.69□□□□□ -1.5
HMGA1P17096 AC009237.13-201ENST00000603193 276 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms