Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 RN7SKP91-201ENST00000410852 288 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 SLC4A1APP1-201ENST00000419995 602 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC013410.1-201ENST00000436223 1232 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL445567.1-201ENST00000439121 144 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL606490.8-201ENST00000441624 319 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL356133.1-201ENST00000444762 372 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 RPS27AP8-201ENST00000452665 445 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 RPL32P14-201ENST00000463196 378 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 UOX-201ENST00000471089 899 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC083906.1-201ENST00000509298 406 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 RPL12P22-201ENST00000519073 490 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC010476.1-201ENST00000519111 851 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC124293.1-201ENST00000530034 493 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 PHBP2-201ENST00000532859 806 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 PCNPP1-201ENST00000552501 511 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL445383.1-201ENST00000554689 874 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 MIR4312-201ENST00000579909 76 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC084373.1-201ENST00000603311 235 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC245389.2-201ENST00000616023 576 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC242843.1-201ENST00000618702 573 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC010435.1-201ENST00000623353 1177 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 LINC01616-201ENST00000561816 2280 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 CREM-203ENST00000344351 1625 ntTSL 2 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC095038.1-201ENST00000429248 1591 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 SFR1P1-201ENST00000403720 688 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 RNU4-72P-201ENST00000410754 173 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC017019.1-201ENST00000426129 261 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 MTCO2P19-201ENST00000427513 598 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 RPL3P11-201ENST00000434028 1146 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 RPL7P33-201ENST00000444159 742 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AL358794.1-201ENST00000445689 381 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 VN1R32P-201ENST00000452234 905 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 RPL26P30-201ENST00000453533 435 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 TPT1P1-201ENST00000458495 518 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 SLC25A51P1-201ENST00000468432 871 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 SCG5-207ENST00000497208 949 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 RPF2P2-201ENST00000504693 896 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 IGHV1-14-201ENST00000523391 241 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC006362.1-201ENST00000567392 174 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AGGF1P4-201ENST00000568249 801 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AP003115.1-201ENST00000569849 463 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AC117490.2-201ENST00000610042 594 ntBASIC7.5□□□□□ -1.21
CCDC39Q9UFE4 AL031658.2-201ENST00000616850 651 ntBASIC7.5□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms