Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC020633.1-201ENST00000468439 2247 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 MIR1203-201ENST00000408812 85 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC099670.2-201ENST00000435130 321 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 HMGN1P2-201ENST00000445197 310 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC093166.4-201ENST00000457867 318 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC006539.1-201ENST00000481419 501 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 RPS26P24-201ENST00000497656 331 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC006499.4-201ENST00000510947 694 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 RNA5SP230-201ENST00000517039 122 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC060775.1-201ENST00000518241 520 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 IGLV3-30-201ENST00000524362 298 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 FAM27E4-201ENST00000605259 342 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 AL357153.4-201ENST00000620487 1016 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AC073869.7-201ENST00000640874 297 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 FBXL21-201ENST00000297158 1305 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SKA3Q8IX90 AL034546.1-201ENST00000623740 3693 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 MAPK10-328ENST00000641553 4009 ntBASIC5.11□□□□□ -1.59
SKA3Q8IX90 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.11□□□□□ -1.59
SKA3Q8IX90 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 OR7E25P-201ENST00000344844 931 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 RNU1-150P-201ENST00000362491 162 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 RNA5SP500-201ENST00000364486 119 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 RN7SKP78-201ENST00000364711 318 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 MRPL53P1-201ENST00000414323 319 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC079809.1-201ENST00000415468 276 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL035660.1-201ENST00000422041 222 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 CDY8P-201ENST00000428380 1279 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 MTND2P40-201ENST00000436718 841 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 EIF5AP4-201ENST00000441206 465 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC015983.1-201ENST00000441577 373 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 VN1R96P-201ENST00000446052 858 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 CDY20P-201ENST00000447528 1279 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 RSU1P1-201ENST00000453416 441 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 HLA-DPA3-207ENST00000454398 229 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC004129.2-201ENST00000457229 287 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 NDUFA5P5-201ENST00000468361 342 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 EIF3LP3-201ENST00000495197 822 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AP000648.1-201ENST00000529682 397 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms