Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 RNU1-149P-201ENST00000390870 161 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 OR4K12P-201ENST00000406538 961 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AL133482.1-201ENST00000415988 498 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 NENFP1-201ENST00000419476 466 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC024940.3-201ENST00000538551 316 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AP004289.1-201ENST00000436307 2205 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 Z95114.1-201ENST00000624264 14574 ntBASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 AC211486.3-201ENST00000412694 621 ntBASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 AC093162.1-201ENST00000419682 124 ntBASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 AC096741.1-201ENST00000472250 846 ntBASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC88AQ3V6T2 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.84□□□□□ -1.32
CCDC88AQ3V6T2 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.84□□□□□ -1.32
CCDC88AQ3V6T2 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.84□□□□□ -1.32
CCDC88AQ3V6T2 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AL121886.1-201ENST00000358609 435 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AC105399.1-202ENST00000447303 205 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 MEMO1P4-201ENST00000453590 386 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 RPL5P22-201ENST00000480199 884 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 BNIP3P1-201ENST00000547295 580 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AL353729.2-201ENST00000605859 1249 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AC063949.1-201ENST00000552900 865 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 DPPA3P2-202ENST00000557188 1219 ntBASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
CCDC88AQ3V6T2 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC88AQ3V6T2 AC126755.2-208ENST00000327792 462 ntBASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms