Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
RNF4P78317 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 Y_RNA.41-201ENST00000362646 102 ntBASIC6.56□□□□□ -1.36
RNF4P78317 RNU6-931P-201ENST00000363850 107 ntBASIC6.56□□□□□ -1.36
RNF4P78317 RNU6-867P-201ENST00000364956 107 ntBASIC6.56□□□□□ -1.36
RNF4P78317 RNA5SP442-201ENST00000365050 107 ntBASIC6.56□□□□□ -1.36
RNF4P78317 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 RNU6-1119P-201ENST00000384349 108 ntBASIC6.56□□□□□ -1.36
RNF4P78317 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 RN7SKP137-201ENST00000411074 307 ntBASIC6.56□□□□□ -1.36
RNF4P78317 RPL7P8-201ENST00000411964 730 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AL590806.1-201ENST00000415818 853 ntBASIC6.56□□□□□ -1.36
RNF4P78317 IPPKP1-201ENST00000422501 768 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 HSPE1P16-201ENST00000426640 348 ntBASIC6.56□□□□□ -1.36
RNF4P78317 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 MTCO1P3-201ENST00000429327 192 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 KCTD9P1-201ENST00000430462 1167 ntBASIC6.56□□□□□ -1.36
RNF4P78317 GAPDHP34-201ENST00000432112 823 ntBASIC6.56□□□□□ -1.36
RNF4P78317 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 DEFA9P-201ENST00000433042 285 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC093716.1-201ENST00000435923 377 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 BX005266.3-201ENST00000443013 1075 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AL137845.2-201ENST00000444292 988 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 SUMO2P2-201ENST00000456482 255 ntBASIC6.56□□□□□ -1.36
RNF4P78317 MED28P7-201ENST00000456611 530 ntBASIC6.56□□□□□ -1.36
RNF4P78317 RPL23AP8-201ENST00000479812 475 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC079080.1-201ENST00000479841 822 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 AC147055.4-201ENST00000504399 745 ntBASIC6.56□□□□□ -1.36
RNF4P78317 WBP1LP4-201ENST00000505043 344 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC138409.2-202ENST00000507274 458 ntBASIC6.56□□□□□ -1.36
RNF4P78317 CDC42P4-201ENST00000510507 563 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC108120.2-201ENST00000512973 294 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC6.56□□□□□ -1.36
RNF4P78317 SCARNA6-201ENST00000515982 265 ntBASIC6.56□□□□□ -1.36
RNF4P78317 RNU6-678P-201ENST00000516832 109 ntBASIC6.56□□□□□ -1.36
RNF4P78317 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 IGHVII-51-2-201ENST00000519778 259 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 KCTD9P4-201ENST00000526766 1166 ntBASIC6.56□□□□□ -1.36
RNF4P78317 OR5AZ1P-201ENST00000527448 943 ntBASIC6.56□□□□□ -1.36
RNF4P78317 MIR4800-201ENST00000537353 80 ntBASIC6.56□□□□□ -1.36
RNF4P78317 YWHABP2-201ENST00000540201 713 ntBASIC6.56□□□□□ -1.36
RNF4P78317 CCNG2P1-201ENST00000549521 1000 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC6.56□□□□□ -1.36
RNF4P78317 AC087883.1-201ENST00000551882 391 ntBASIC6.56□□□□□ -1.36
RNF4P78317 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 AC245505.1-201ENST00000556398 224 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 AC096708.2-201ENST00000577676 512 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC6.56□□□□□ -1.36
RNF4P78317 BNIP3P26-201ENST00000600827 554 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AL031775.1-201ENST00000607014 887 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC063962.1-201ENST00000608199 521 ntBASIC6.56□□□□□ -1.36
RNF4P78317 DLEU2_1.1-201ENST00000612089 120 ntBASIC6.56□□□□□ -1.36
RNF4P78317 MIR8082-201ENST00000612488 81 ntBASIC6.56□□□□□ -1.36
RNF4P78317 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 AC008498.1-201ENST00000613012 531 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC100793.4-201ENST00000613683 429 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AC245407.2-201ENST00000614199 451 ntBASIC6.56□□□□□ -1.36
RNF4P78317 DLEU2_1.2-201ENST00000614667 120 ntBASIC6.56□□□□□ -1.36
RNF4P78317 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC6.56□□□□□ -1.36
RNF4P78317 AL049541.2-201ENST00000626377 555 ntBASIC6.56□□□□□ -1.36
RNF4P78317 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 SAMMSON-209ENST00000641222 1100 ntBASIC6.56□□□□□ -1.36
RNF4P78317 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
RNF4P78317 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
RNF4P78317 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC6.56□□□□□ -1.36
RNF4P78317 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
RNF4P78317 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms