Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
COL4A4P53420 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 AC002090.1-201ENST00000625000 2138 ntBASIC5.9□□□□□ -1.46
COL4A4P53420 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC5.9□□□□□ -1.46
COL4A4P53420 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
COL4A4P53420 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A4P53420 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
COL4A4P53420 MIR23A-201ENST00000385245 73 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
COL4A4P53420 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A4P53420 AC007161.1-204ENST00000423039 460 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 AC105399.1-202ENST00000447303 205 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 TRY2P-201ENST00000448860 689 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 AC079080.1-201ENST00000479841 822 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 RPL5P22-201ENST00000480199 884 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 EIF3KP3-201ENST00000514461 639 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 BRD9P1-201ENST00000529855 560 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 AC137627.1-201ENST00000545761 289 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 BNIP3P1-201ENST00000547295 580 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.9□□□□□ -1.47
COL4A4P53420 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.9□□□□□ -1.47
COL4A4P53420 MIR6758-201ENST00000620653 63 ntBASIC5.9□□□□□ -1.47
COL4A4P53420 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A4P53420 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
COL4A4P53420 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
COL4A4P53420 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A4P53420 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A4P53420 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC5.9□□□□□ -1.47
COL4A4P53420 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A4P53420 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A4P53420 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
COL4A4P53420 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL4A4P53420 CCDC162P-202ENST00000368966 6751 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
COL4A4P53420 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 AL359195.2-201ENST00000623657 4412 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC5.89□□□□□ -1.47
COL4A4P53420 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC5.89□□□□□ -1.47
COL4A4P53420 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 AC010132.2-201ENST00000295493 1043 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 AL121886.1-201ENST00000358609 435 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 U3.10-201ENST00000364459 214 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.89□□□□□ -1.47
COL4A4P53420 AL590399.2-201ENST00000427536 309 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.89□□□□□ -1.47
COL4A4P53420 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.89□□□□□ -1.47
COL4A4P53420 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.89□□□□□ -1.47
COL4A4P53420 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.89□□□□□ -1.47
COL4A4P53420 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
COL4A4P53420 RAB9BP1-201ENST00000519581 626 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL4A4P53420 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL4A4P53420 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.89□□□□□ -1.47
COL4A4P53420 AC015712.7-201ENST00000615211 635 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 AC021422.1-201ENST00000621212 473 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 AL353662.3-201ENST00000625131 237 ntBASIC5.89□□□□□ -1.47
COL4A4P53420 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.89□□□□□ -1.47
COL4A4P53420 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
COL4A4P53420 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
COL4A4P53420 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.89□□□□□ -1.47
COL4A4P53420 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC5.89□□□□□ -1.47
COL4A4P53420 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL4A4P53420 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL4A4P53420 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
COL4A4P53420 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL4A4P53420 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
COL4A4P53420 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL4A4P53420 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 RNA5SP505-201ENST00000364748 108 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.88□□□□□ -1.47
COL4A4P53420 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.88□□□□□ -1.47
COL4A4P53420 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.88□□□□□ -1.47
COL4A4P53420 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 RN7SKP253-201ENST00000516424 309 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 PCNPP1-201ENST00000552501 511 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 AC009237.13-201ENST00000603193 276 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 RNF138P2-201ENST00000603490 592 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 AL353729.2-201ENST00000605859 1249 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 AC010329.1-201ENST00000593903 8328 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms