Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.35
BRCA1P38398 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC6.65□□□□□ -1.35
BRCA1P38398 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.35
BRCA1P38398 AC114876.1-201ENST00000490962 1366 ntBASIC6.65□□□□□ -1.35
BRCA1P38398 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.35
BRCA1P38398 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
BRCA1P38398 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
BRCA1P38398 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
BRCA1P38398 Y_RNA.126-201ENST00000363382 111 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 RPL10P10-201ENST00000403509 664 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 AC007562.1-201ENST00000421819 517 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 GSTM5P1-201ENST00000434751 660 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 MTCYBP21-201ENST00000443300 1113 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 AC023274.2-201ENST00000445264 521 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 RPS17P5-201ENST00000498293 408 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 HPRT1P1-201ENST00000509498 657 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.64□□□□□ -1.35
BRCA1P38398 AGGF1P7-201ENST00000562369 913 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC6.64□□□□□ -1.35
BRCA1P38398 AL034408.1-201ENST00000637712 664 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC6.64□□□□□ -1.35
BRCA1P38398 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
BRCA1P38398 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
BRCA1P38398 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
BRCA1P38398 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
BRCA1P38398 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.64□□□□□ -1.35
BRCA1P38398 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
BRCA1P38398 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.64□□□□□ -1.35
BRCA1P38398 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
BRCA1P38398 AL121886.1-201ENST00000358609 435 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.64□□□□□ -1.35
BRCA1P38398 RNA5SP91-201ENST00000390902 119 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 TMA16P2-201ENST00000413187 601 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 AC007064.3-201ENST00000422608 359 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC6.64□□□□□ -1.35
BRCA1P38398 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.64□□□□□ -1.35
BRCA1P38398 AC026979.1-201ENST00000492525 396 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.64□□□□□ -1.35
BRCA1P38398 IGBP1P5-201ENST00000507524 1000 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
BRCA1P38398 MTND6P2-201ENST00000512226 524 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.64□□□□□ -1.35
BRCA1P38398 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
BRCA1P38398 EDDM3DP-201ENST00000554692 434 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6.64□□□□□ -1.35
BRCA1P38398 AP000919.1-201ENST00000582850 985 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.64□□□□□ -1.35
BRCA1P38398 AC132825.1-201ENST00000463573 2247 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.64□□□□□ -1.35
BRCA1P38398 AC006206.1-201ENST00000544842 3387 ntBASIC6.64□□□□□ -1.35
BRCA1P38398 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC6.64□□□□□ -1.35
BRCA1P38398 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 AL008638.3-201ENST00000623027 5182 ntBASIC6.63□□□□□ -1.35
BRCA1P38398 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
BRCA1P38398 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.63□□□□□ -1.35
BRCA1P38398 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.63□□□□□ -1.35
BRCA1P38398 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.63□□□□□ -1.35
BRCA1P38398 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
BRCA1P38398 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC6.63□□□□□ -1.35
BRCA1P38398 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
BRCA1P38398 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.63□□□□□ -1.35
BRCA1P38398 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.63□□□□□ -1.35
BRCA1P38398 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC6.63□□□□□ -1.35
BRCA1P38398 CYCSP42-201ENST00000450823 238 ntBASIC6.63□□□□□ -1.35
BRCA1P38398 AC234781.3-201ENST00000452540 973 ntBASIC6.63□□□□□ -1.35
BRCA1P38398 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
BRCA1P38398 RPS7P6-201ENST00000485777 579 ntBASIC6.63□□□□□ -1.35
BRCA1P38398 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.63□□□□□ -1.35
BRCA1P38398 AL121594.2-201ENST00000541658 472 ntBASIC6.63□□□□□ -1.35
BRCA1P38398 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.63□□□□□ -1.35
BRCA1P38398 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.63□□□□□ -1.35
BRCA1P38398 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.63□□□□□ -1.35
BRCA1P38398 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC6.63□□□□□ -1.35
BRCA1P38398 AC060766.1-201ENST00000590824 627 ntBASIC6.63□□□□□ -1.35
BRCA1P38398 CYCSP1-201ENST00000604815 315 ntBASIC6.63□□□□□ -1.35
BRCA1P38398 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.63□□□□□ -1.35
BRCA1P38398 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 PABPC1P8-201ENST00000452851 2086 ntBASIC6.63□□□□□ -1.35
BRCA1P38398 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
BRCA1P38398 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
BRCA1P38398 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC6.62□□□□□ -1.35
BRCA1P38398 AL078621.3-201ENST00000623707 2042 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC6.62□□□□□ -1.35
BRCA1P38398 CNOT7P1-201ENST00000429006 852 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 AC093414.1-201ENST00000434712 514 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
BRCA1P38398 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 141.5 ms