Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 YWHABP2-201ENST00000540201 713 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 AL356752.1-201ENST00000615844 593 ntBASIC6.81□□□□□ -1.32
COL5A3P25940 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC6.81□□□□□ -1.32
COL5A3P25940 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.81□□□□□ -1.32
COL5A3P25940 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC6.81□□□□□ -1.32
COL5A3P25940 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL5A3P25940 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC6.81□□□□□ -1.32
COL5A3P25940 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.81□□□□□ -1.32
COL5A3P25940 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 NXF4-202ENST00000416098 1465 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC6.8□□□□□ -1.32
COL5A3P25940 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 HNRNPA1P54-201ENST00000411857 9714 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
COL5A3P25940 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
COL5A3P25940 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.8□□□□□ -1.32
COL5A3P25940 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
COL5A3P25940 AL009179.1-201ENST00000406085 265 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 AL133482.1-201ENST00000415988 498 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 RIMKLBP2-201ENST00000424737 654 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.8□□□□□ -1.32
COL5A3P25940 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC6.8□□□□□ -1.32
COL5A3P25940 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
COL5A3P25940 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC6.8□□□□□ -1.32
COL5A3P25940 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.8□□□□□ -1.32
COL5A3P25940 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.8□□□□□ -1.32
COL5A3P25940 AC090142.2-201ENST00000483263 416 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 AC109464.1-201ENST00000511091 819 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC6.8□□□□□ -1.32
COL5A3P25940 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.8□□□□□ -1.32
COL5A3P25940 GMFG-202ENST00000594700 397 ntTSL 2 BASIC6.8□□□□□ -1.32
COL5A3P25940 AL513327.3-201ENST00000602618 469 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.8□□□□□ -1.32
COL5A3P25940 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 IRF5P1-201ENST00000504852 2164 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 AP004289.1-201ENST00000436307 2205 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
COL5A3P25940 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.8□□□□□ -1.32
COL5A3P25940 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.8□□□□□ -1.32
COL5A3P25940 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 AC022164.1-201ENST00000568767 2673 ntBASIC6.8□□□□□ -1.32
COL5A3P25940 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
COL5A3P25940 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL5A3P25940 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.79□□□□□ -1.32
COL5A3P25940 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
COL5A3P25940 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
COL5A3P25940 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 U3.3-201ENST00000362986 216 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 RN7SKP113-201ENST00000363891 295 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 RNA5SP455-201ENST00000365190 119 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.79□□□□□ -1.32
COL5A3P25940 AC093414.1-201ENST00000434712 514 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC6.79□□□□□ -1.32
COL5A3P25940 RPL21P133-201ENST00000443666 476 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 AC023818.1-201ENST00000498379 384 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.79□□□□□ -1.32
COL5A3P25940 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.79□□□□□ -1.32
COL5A3P25940 AC012557.1-201ENST00000607115 611 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.79□□□□□ -1.32
COL5A3P25940 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.79□□□□□ -1.32
COL5A3P25940 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.79□□□□□ -1.32
COL5A3P25940 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.79□□□□□ -1.32
COL5A3P25940 AC007996.1-201ENST00000620414 2821 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC6.79□□□□□ -1.32
COL5A3P25940 MGAT2P2-201ENST00000427194 797 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.79□□□□□ -1.32
COL5A3P25940 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC6.79□□□□□ -1.32
COL5A3P25940 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.79□□□□□ -1.32
COL5A3P25940 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL5A3P25940 AC009127.1-201ENST00000467090 155 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.79□□□□□ -1.32
COL5A3P25940 THAP12P4-201ENST00000528321 2266 ntBASIC6.79□□□□□ -1.32
COL5A3P25940 AC068870.1-201ENST00000563737 2455 ntBASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms