Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.84□□□□□ -1.15
MSH6P52701 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC7.84□□□□□ -1.15
MSH6P52701 CDC42EP3P1-201ENST00000601004 764 ntBASIC7.84□□□□□ -1.15
MSH6P52701 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC7.84□□□□□ -1.15
MSH6P52701 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC7.84□□□□□ -1.15
MSH6P52701 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
MSH6P52701 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.84□□□□□ -1.15
MSH6P52701 MFSD8-219ENST00000641228 2559 ntBASIC7.84□□□□□ -1.15
MSH6P52701 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
MSH6P52701 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC7.84□□□□□ -1.15
MSH6P52701 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC7.84□□□□□ -1.15
MSH6P52701 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.84□□□□□ -1.15
MSH6P52701 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSH6P52701 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC7.84□□□□□ -1.15
MSH6P52701 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC7.84□□□□□ -1.15
MSH6P52701 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
MSH6P52701 MIR192-201ENST00000384915 110 ntBASIC7.84□□□□□ -1.16
MSH6P52701 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC7.84□□□□□ -1.16
MSH6P52701 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.84□□□□□ -1.16
MSH6P52701 RN7SL205P-201ENST00000490174 284 ntBASIC7.84□□□□□ -1.16
MSH6P52701 RN7SL591P-201ENST00000496150 292 ntBASIC7.84□□□□□ -1.16
MSH6P52701 AC126615.2-201ENST00000553003 515 ntBASIC7.84□□□□□ -1.16
MSH6P52701 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC7.84□□□□□ -1.16
MSH6P52701 RN7SL52P-201ENST00000584271 284 ntBASIC7.84□□□□□ -1.16
MSH6P52701 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC7.84□□□□□ -1.16
MSH6P52701 RN7SL722P-201ENST00000617780 284 ntBASIC7.84□□□□□ -1.16
MSH6P52701 RN7SL565P-201ENST00000618246 284 ntBASIC7.84□□□□□ -1.16
MSH6P52701 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC7.84□□□□□ -1.16
MSH6P52701 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.16
MSH6P52701 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.16
MSH6P52701 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
MSH6P52701 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC7.83□□□□□ -1.16
MSH6P52701 AC006511.3-201ENST00000624929 1783 ntBASIC7.83□□□□□ -1.16
MSH6P52701 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
MSH6P52701 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
MSH6P52701 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 AL353763.1-201ENST00000624467 1628 ntBASIC7.83□□□□□ -1.16
MSH6P52701 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC7.83□□□□□ -1.16
MSH6P52701 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC7.83□□□□□ -1.16
MSH6P52701 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC7.83□□□□□ -1.16
MSH6P52701 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.83□□□□□ -1.16
MSH6P52701 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.83□□□□□ -1.16
MSH6P52701 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC7.83□□□□□ -1.16
MSH6P52701 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC7.83□□□□□ -1.16
MSH6P52701 AC105399.1-202ENST00000447303 205 ntBASIC7.83□□□□□ -1.16
MSH6P52701 AL022319.1-201ENST00000458183 1167 ntBASIC7.83□□□□□ -1.16
MSH6P52701 AL603882.1-201ENST00000463059 681 ntBASIC7.83□□□□□ -1.16
MSH6P52701 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC7.83□□□□□ -1.16
MSH6P52701 AC092490.3-201ENST00000545370 572 ntBASIC7.83□□□□□ -1.16
MSH6P52701 RBM22P1-201ENST00000578589 1214 ntBASIC7.83□□□□□ -1.16
MSH6P52701 AC234771.5-201ENST00000600161 514 ntBASIC7.83□□□□□ -1.16
MSH6P52701 AC069307.1-201ENST00000602820 447 ntBASIC7.83□□□□□ -1.16
MSH6P52701 AC090527.3-201ENST00000619041 548 ntBASIC7.83□□□□□ -1.16
MSH6P52701 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC7.83□□□□□ -1.16
MSH6P52701 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
MSH6P52701 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSH6P52701 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC7.82□□□□□ -1.16
MSH6P52701 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC7.82□□□□□ -1.16
MSH6P52701 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC7.82□□□□□ -1.16
MSH6P52701 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC7.82□□□□□ -1.16
MSH6P52701 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.82□□□□□ -1.16
MSH6P52701 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC7.82□□□□□ -1.16
MSH6P52701 AL117339.4-201ENST00000608335 7063 ntBASIC7.82□□□□□ -1.16
MSH6P52701 RNA5SP87-201ENST00000384155 118 ntBASIC7.82□□□□□ -1.16
MSH6P52701 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 RPL5P22-201ENST00000480199 884 ntBASIC7.82□□□□□ -1.16
MSH6P52701 RN7SKP147-201ENST00000517154 244 ntBASIC7.82□□□□□ -1.16
MSH6P52701 AC027667.1-201ENST00000545814 304 ntBASIC7.82□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms