Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC017019.1-201ENST00000426129 261 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 GAPDHP75-201ENST00000433910 943 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 AC064862.5-201ENST00000440618 334 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 AC023141.8-201ENST00000442554 208 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 BMS1P10-201ENST00000443754 1120 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 FTLP8-201ENST00000446770 267 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 RPL31P11-202ENST00000454082 372 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.64□□□□□ -1.51
SHOX2O60902 NXT1P1-201ENST00000458481 316 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.64□□□□□ -1.51
SHOX2O60902 RN7SL273P-201ENST00000481561 299 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 RN7SL346P-201ENST00000491561 294 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 CDC42P3-201ENST00000518493 633 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.64□□□□□ -1.51
SHOX2O60902 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.64□□□□□ -1.51
SHOX2O60902 AC084851.2-201ENST00000530377 364 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.64□□□□□ -1.51
SHOX2O60902 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC5.64□□□□□ -1.51
SHOX2O60902 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.64□□□□□ -1.51
SHOX2O60902 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
SHOX2O60902 DPRXP4-201ENST00000578053 568 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC5.64□□□□□ -1.51
SHOX2O60902 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC5.64□□□□□ -1.51
SHOX2O60902 Z95327.3-201ENST00000610385 572 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC5.64□□□□□ -1.51
SHOX2O60902 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.64□□□□□ -1.51
SHOX2O60902 AC022106.2-201ENST00000620114 757 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 AC073488.3-201ENST00000631611 778 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHOX2O60902 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHOX2O60902 OR55B1P-203ENST00000641518 2602 ntBASIC5.64□□□□□ -1.51
SHOX2O60902 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SHOX2O60902 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
SHOX2O60902 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SHOX2O60902 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SHOX2O60902 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHOX2O60902 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SHOX2O60902 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SHOX2O60902 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.64□□□□□ -1.51
SHOX2O60902 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
SHOX2O60902 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 RNA5SP77-201ENST00000365394 120 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 YWHAZP4-201ENST00000392459 708 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.63□□□□□ -1.51
SHOX2O60902 SETP15-201ENST00000412724 337 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.63□□□□□ -1.51
SHOX2O60902 RPL35AP31-201ENST00000418340 337 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 GPN3P1-201ENST00000423883 535 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 AC012519.1-201ENST00000424588 610 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.63□□□□□ -1.51
SHOX2O60902 OR6R1P-201ENST00000431838 940 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 AC044810.1-201ENST00000480271 711 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 NPM1P29-201ENST00000483112 803 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC5.63□□□□□ -1.51
SHOX2O60902 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.63□□□□□ -1.51
SHOX2O60902 RNA5SP464-201ENST00000516251 108 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 RN7SKP183-201ENST00000517169 324 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 AC131935.1-201ENST00000524621 333 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 AC006349.1-201ENST00000555526 235 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.63□□□□□ -1.51
SHOX2O60902 NIFKP4-201ENST00000567275 1192 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC5.63□□□□□ -1.51
SHOX2O60902 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.63□□□□□ -1.51
SHOX2O60902 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.63□□□□□ -1.51
SHOX2O60902 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.63□□□□□ -1.51
SHOX2O60902 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC5.63□□□□□ -1.51
SHOX2O60902 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.63□□□□□ -1.51
SHOX2O60902 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.63□□□□□ -1.51
SHOX2O60902 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC5.63□□□□□ -1.51
SHOX2O60902 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.63□□□□□ -1.51
SHOX2O60902 MIR7109-201ENST00000613748 65 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 uc_338.7-201ENST00000621834 124 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 AC015871.5-202ENST00000623252 701 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SHOX2O60902 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.63□□□□□ -1.51
SHOX2O60902 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.63□□□□□ -1.51
SHOX2O60902 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.63□□□□□ -1.51
SHOX2O60902 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.63□□□□□ -1.51
SHOX2O60902 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SHOX2O60902 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 CASC19-246ENST00000641625 1606 ntBASIC5.63□□□□□ -1.51
SHOX2O60902 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHOX2O60902 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHOX2O60902 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHOX2O60902 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
SHOX2O60902 AC017079.1-201ENST00000333650 415 ntBASIC5.62□□□□□ -1.51
SHOX2O60902 RNA5SP485-201ENST00000365053 119 ntBASIC5.62□□□□□ -1.51
SHOX2O60902 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SHOX2O60902 ARSFP1-201ENST00000398758 477 ntBASIC5.62□□□□□ -1.51
SHOX2O60902 RN7SKP16-201ENST00000410180 299 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms