Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC006116.3-201ENST00000592968 361 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC012557.1-201ENST00000607115 611 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 ATM-229ENST00000639953 587 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL159987.1-201ENST00000347911 293 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MTCYBP21-201ENST00000443300 1113 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL389915.2-201ENST00000454576 441 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 RNA5SP34-201ENST00000516887 130 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC004477.3-201ENST00000614061 590 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL355974.3-201ENST00000617383 467 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AP000641.1-201ENST00000531988 1639 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 RPS26P13-201ENST00000419030 330 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MGAT2P1-201ENST00000449718 797 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC009120.3-201ENST00000563335 499 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL121612.2-201ENST00000612261 482 ntBASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SYNE1Q8NF91 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 RBMY2KP-201ENST00000418221 992 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AL445687.2-201ENST00000458156 728 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC098847.1-201ENST00000473094 348 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC096754.1-201ENST00000508904 818 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 OR11H2-202ENST00000641517 1085 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AL672167.1-205ENST00000641112 3080 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC023421.1-201ENST00000590535 1785 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 OR10R3P-201ENST00000361688 942 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 CRP-204ENST00000368112 787 ntTSL 2 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC016739.1-201ENST00000405359 345 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC016027.4-201ENST00000450866 277 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC007537.2-201ENST00000472093 511 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 EIF3LP3-201ENST00000495197 822 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 SETP21-201ENST00000514799 892 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 ZNF101P1-201ENST00000435701 1720 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SYNE1Q8NF91 AP002833.3-201ENST00000625075 2265 ntBASIC1.75□□□□□ -2.13
SYNE1Q8NF91 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms