Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 RNA5SP500-201ENST00000364486 119 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 RPL7P58-201ENST00000402913 758 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 RN7SKP151-201ENST00000410230 316 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 NPM1P4-201ENST00000414095 812 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AL121578.1-201ENST00000428051 892 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 SDC4P-201ENST00000453285 601 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AL133445.1-201ENST00000467051 452 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 RN7SL799P-201ENST00000475891 298 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 PFN1P6-201ENST00000476786 399 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 OR5M14P-201ENST00000506803 618 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AC008126.1-201ENST00000549019 480 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AC027334.1-201ENST00000603257 310 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AL137246.2-201ENST00000613439 662 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AL731532.1-201ENST00000623972 4236 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 CDC27P2-201ENST00000425026 1922 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 RN7SKP162-201ENST00000363605 345 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 SPTLC1P2-201ENST00000407089 121 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 RN7SKP166-201ENST00000410812 305 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 RPS4XP5-201ENST00000419038 768 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC007394.1-201ENST00000421941 531 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC099677.3-201ENST00000427081 395 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 SPRYD7P1-201ENST00000443861 570 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 RPL7L1P3-201ENST00000455249 689 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 ACA64.4-201ENST00000459070 127 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC099521.1-201ENST00000482557 334 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC091544.1-201ENST00000484702 348 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC108693.1-201ENST00000496068 432 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 OR4A40P-201ENST00000533878 948 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC115989.2-201ENST00000578640 563 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AL139099.4-201ENST00000614802 114 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 ZNF402P-201ENST00000404435 3100 ntBASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.94□□□□□ -1.46
HDDC3Q8N4P3 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 AC011504.1-201ENST00000623331 4103 ntBASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDDC3Q8N4P3 RNA5SP46-201ENST00000362370 120 ntBASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms