Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 GARSP1-201ENST00000570895 719 ntBASIC4.42□□□□□ -1.7
HIST1H1AQ02539 STARD6-202ENST00000577499 696 ntTSL 2 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 MIR4472-2-201ENST00000582069 67 ntBASIC4.42□□□□□ -1.7
HIST1H1AQ02539 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 SMIM12P1-201ENST00000603004 274 ntBASIC4.42□□□□□ -1.7
HIST1H1AQ02539 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 NANOGP3-201ENST00000605855 286 ntBASIC4.42□□□□□ -1.7
HIST1H1AQ02539 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 AC073389.3-201ENST00000609434 935 ntBASIC4.42□□□□□ -1.7
HIST1H1AQ02539 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 AL357562.1-201ENST00000624911 609 ntBASIC4.42□□□□□ -1.7
HIST1H1AQ02539 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HIST1H1AQ02539 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 RNA5SP110-201ENST00000362638 115 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 RN7SKP250-201ENST00000363924 321 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AC087752.1-201ENST00000391360 558 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 VN1R21P-201ENST00000426703 765 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AL353662.1-201ENST00000439099 327 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AL445466.1-201ENST00000448432 357 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 HMGB1P7-201ENST00000450921 612 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 RPL12P39-201ENST00000455456 496 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 RPL38P3-201ENST00000484463 213 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 MIR2117-201ENST00000516780 80 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AC116917.1-201ENST00000520558 305 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 AC015712.7-201ENST00000615211 635 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 MIR6813-201ENST00000621638 56 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 5S_rRNA.29-201ENST00000641250 107 ntBASIC4.41□□□□□ -1.7
HIST1H1AQ02539 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.41□□□□□ -1.7
HIST1H1AQ02539 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 OR4G1P-202ENST00000641173 1788 ntBASIC4.4□□□□□ -1.7
HIST1H1AQ02539 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC4.4□□□□□ -1.7
HIST1H1AQ02539 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms