Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
LIM2P55344 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
LIM2P55344 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
LIM2P55344 AC009135.2-201ENST00000624136 1768 ntBASIC5.37□□□□□ -1.55
LIM2P55344 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.36□□□□□ -1.55
LIM2P55344 AC006600.2-201ENST00000624834 2506 ntBASIC5.36□□□□□ -1.55
LIM2P55344 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
LIM2P55344 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 AC123769.1-201ENST00000530992 3192 ntBASIC5.36□□□□□ -1.55
LIM2P55344 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LIM2P55344 RNA5SP30-201ENST00000365552 115 ntBASIC5.36□□□□□ -1.55
LIM2P55344 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
LIM2P55344 RMRPP5-201ENST00000411156 267 ntBASIC5.36□□□□□ -1.55
LIM2P55344 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.36□□□□□ -1.55
LIM2P55344 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.36□□□□□ -1.55
LIM2P55344 AC093155.2-201ENST00000420734 937 ntBASIC5.36□□□□□ -1.55
LIM2P55344 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.36□□□□□ -1.55
LIM2P55344 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LIM2P55344 MTND6P12-201ENST00000428247 522 ntBASIC5.36□□□□□ -1.55
LIM2P55344 RPS29P14-201ENST00000431518 171 ntBASIC5.36□□□□□ -1.55
LIM2P55344 GAPDHP34-201ENST00000432112 823 ntBASIC5.36□□□□□ -1.55
LIM2P55344 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.36□□□□□ -1.55
LIM2P55344 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.36□□□□□ -1.55
LIM2P55344 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.36□□□□□ -1.55
LIM2P55344 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 LRRC37A14P-201ENST00000452297 462 ntBASIC5.36□□□□□ -1.55
LIM2P55344 RPL12P24-201ENST00000474907 486 ntBASIC5.36□□□□□ -1.55
LIM2P55344 AC087672.1-201ENST00000479876 766 ntBASIC5.36□□□□□ -1.55
LIM2P55344 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.36□□□□□ -1.55
LIM2P55344 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.36□□□□□ -1.55
LIM2P55344 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.36□□□□□ -1.55
LIM2P55344 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.36□□□□□ -1.55
LIM2P55344 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.36□□□□□ -1.55
LIM2P55344 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.36□□□□□ -1.55
LIM2P55344 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
LIM2P55344 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.36□□□□□ -1.55
LIM2P55344 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.36□□□□□ -1.55
LIM2P55344 SAMM50P1-201ENST00000455403 1399 ntBASIC5.36□□□□□ -1.55
LIM2P55344 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
LIM2P55344 AC139426.3-201ENST00000605648 2059 ntBASIC5.36□□□□□ -1.55
LIM2P55344 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIM2P55344 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.36□□□□□ -1.55
LIM2P55344 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
LIM2P55344 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
LIM2P55344 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIM2P55344 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
LIM2P55344 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIM2P55344 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIM2P55344 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.35□□□□□ -1.55
LIM2P55344 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIM2P55344 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIM2P55344 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC5.35□□□□□ -1.55
LIM2P55344 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.35□□□□□ -1.55
LIM2P55344 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.35□□□□□ -1.55
LIM2P55344 AL158827.1-201ENST00000416300 391 ntBASIC5.35□□□□□ -1.55
LIM2P55344 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.35□□□□□ -1.55
LIM2P55344 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.35□□□□□ -1.55
LIM2P55344 AL662874.1-201ENST00000426065 230 ntBASIC5.35□□□□□ -1.55
LIM2P55344 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.35□□□□□ -1.55
LIM2P55344 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.35□□□□□ -1.55
LIM2P55344 AC138761.5-201ENST00000433967 325 ntBASIC5.35□□□□□ -1.55
LIM2P55344 MRPS21P3-201ENST00000436696 262 ntBASIC5.35□□□□□ -1.55
LIM2P55344 SUMO2P3-201ENST00000438311 288 ntBASIC5.35□□□□□ -1.55
LIM2P55344 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.35□□□□□ -1.55
LIM2P55344 DUTP7-201ENST00000507982 486 ntBASIC5.35□□□□□ -1.55
LIM2P55344 AC111000.6-201ENST00000514471 709 ntBASIC5.35□□□□□ -1.55
LIM2P55344 GAPDHP62-201ENST00000515313 990 ntBASIC5.35□□□□□ -1.55
LIM2P55344 RNU6-964P-201ENST00000516524 69 ntBASIC5.35□□□□□ -1.55
LIM2P55344 SNORA43.3-201ENST00000517240 103 ntBASIC5.35□□□□□ -1.55
LIM2P55344 IGLV3-24-201ENST00000517477 197 ntBASIC5.35□□□□□ -1.55
LIM2P55344 AC137627.1-201ENST00000545761 289 ntBASIC5.35□□□□□ -1.55
LIM2P55344 IGBP1P1-201ENST00000554337 1009 ntBASIC5.35□□□□□ -1.55
LIM2P55344 NPM1P5-201ENST00000557228 838 ntBASIC5.35□□□□□ -1.55
LIM2P55344 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.35□□□□□ -1.55
LIM2P55344 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.35□□□□□ -1.55
LIM2P55344 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.35□□□□□ -1.55
LIM2P55344 AC008521.2-201ENST00000591021 259 ntBASIC5.35□□□□□ -1.55
LIM2P55344 AL353729.2-201ENST00000605859 1249 ntBASIC5.35□□□□□ -1.55
LIM2P55344 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.35□□□□□ -1.55
LIM2P55344 AC005618.4-201ENST00000625053 554 ntBASIC5.35□□□□□ -1.55
LIM2P55344 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIM2P55344 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIM2P55344 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms