Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL5A3P25940 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.85□□□□□ -1.31
COL5A3P25940 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
COL5A3P25940 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
COL5A3P25940 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
COL5A3P25940 RAB28P1-201ENST00000411517 641 ntBASIC6.85□□□□□ -1.31
COL5A3P25940 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC6.85□□□□□ -1.31
COL5A3P25940 AL365220.1-201ENST00000432923 399 ntBASIC6.85□□□□□ -1.31
COL5A3P25940 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.85□□□□□ -1.31
COL5A3P25940 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.85□□□□□ -1.31
COL5A3P25940 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.85□□□□□ -1.31
COL5A3P25940 AF230666.2-201ENST00000602328 725 ntBASIC6.85□□□□□ -1.31
COL5A3P25940 MIR7641-1-201ENST00000627518 61 ntBASIC6.85□□□□□ -1.31
COL5A3P25940 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC6.85□□□□□ -1.31
COL5A3P25940 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.85□□□□□ -1.31
COL5A3P25940 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC6.85□□□□□ -1.31
COL5A3P25940 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 AL008638.3-201ENST00000623027 5182 ntBASIC6.85□□□□□ -1.31
COL5A3P25940 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
COL5A3P25940 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL5A3P25940 COX6B1P1-201ENST00000415962 213 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.84□□□□□ -1.31
COL5A3P25940 AC093655.2-201ENST00000425735 631 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC6.84□□□□□ -1.31
COL5A3P25940 RPL34P20-201ENST00000442771 351 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 AC104634.1-201ENST00000452720 462 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 AC058823.1-201ENST00000485315 474 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 RN7SL423P-201ENST00000486202 304 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.84□□□□□ -1.31
COL5A3P25940 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.84□□□□□ -1.31
COL5A3P25940 MIR3934-201ENST00000579806 107 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 H3F3BP2-201ENST00000583907 357 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 AP003789.1-201ENST00000617737 605 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 AC009948.3-201ENST00000603415 1798 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
COL5A3P25940 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
COL5A3P25940 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.84□□□□□ -1.31
COL5A3P25940 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 HSPD1P8-201ENST00000400121 1658 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.84□□□□□ -1.31
COL5A3P25940 AC006600.2-201ENST00000624834 2506 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC6.84□□□□□ -1.31
COL5A3P25940 EEF1A1P33-201ENST00000554413 1362 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.84□□□□□ -1.31
COL5A3P25940 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 AC005725.1-201ENST00000577346 2607 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
COL5A3P25940 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
COL5A3P25940 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
COL5A3P25940 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 RN7SKP149-201ENST00000363008 344 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 AL121977.1-201ENST00000401636 979 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC6.84□□□□□ -1.31
COL5A3P25940 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.84□□□□□ -1.31
COL5A3P25940 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.84□□□□□ -1.31
COL5A3P25940 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.84□□□□□ -1.31
COL5A3P25940 AC074101.1-201ENST00000637861 241 ntBASIC6.84□□□□□ -1.31
COL5A3P25940 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL5A3P25940 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
COL5A3P25940 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL5A3P25940 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.32
COL5A3P25940 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
COL5A3P25940 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.84□□□□□ -1.32
COL5A3P25940 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
COL5A3P25940 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.83□□□□□ -1.32
COL5A3P25940 AC006058.1-201ENST00000568686 5067 ntBASIC6.83□□□□□ -1.32
COL5A3P25940 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.83□□□□□ -1.32
COL5A3P25940 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL5A3P25940 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms