Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AL021877.2-201ENST00000624442 10684 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 RNVU1-6-201ENST00000364688 164 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AL357752.1-201ENST00000412817 349 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 RPS29P22-201ENST00000472363 168 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 STRADBP1-201ENST00000478954 1281 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 RN7SL570P-201ENST00000484405 292 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC015720.2-201ENST00000567709 334 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC068769.1-201ENST00000474767 2426 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 CYB5AP4-201ENST00000396692 399 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AL772161.1-201ENST00000439130 476 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 CSNK1A1P3-201ENST00000504105 330 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 RNU6-941P-201ENST00000516346 108 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 TPM3P3-201ENST00000521343 354 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC078878.1-201ENST00000539832 958 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AL512310.9-201ENST00000553311 948 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC109583.2-201ENST00000617367 129 ntBASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
CCDC88AQ3V6T2 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 RNU1-43P-201ENST00000365052 165 ntBASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC88AQ3V6T2 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 HSPA8P14-201ENST00000552265 1805 ntBASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 SNORD1C-201ENST00000363315 78 ntBASIC6.9□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms