Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.39□□□□□ -1.55
LIM2P55344 MIR193BHG-214ENST00000641765 509 ntBASIC5.39□□□□□ -1.55
LIM2P55344 AC092451.3-201ENST00000625067 1343 ntBASIC5.39□□□□□ -1.55
LIM2P55344 AC015689.2-201ENST00000528172 1738 ntBASIC5.39□□□□□ -1.55
LIM2P55344 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.39□□□□□ -1.55
LIM2P55344 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.39□□□□□ -1.55
LIM2P55344 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.38□□□□□ -1.55
LIM2P55344 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
LIM2P55344 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
LIM2P55344 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 NENFP1-201ENST00000419476 466 ntBASIC5.38□□□□□ -1.55
LIM2P55344 AC079807.1-201ENST00000429993 481 ntBASIC5.38□□□□□ -1.55
LIM2P55344 RPL23AP19-201ENST00000436229 369 ntBASIC5.38□□□□□ -1.55
LIM2P55344 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 RPS23P9-201ENST00000448848 438 ntBASIC5.38□□□□□ -1.55
LIM2P55344 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 RPS3AP15-201ENST00000483874 781 ntBASIC5.38□□□□□ -1.55
LIM2P55344 OR7E157P-201ENST00000494376 911 ntBASIC5.38□□□□□ -1.55
LIM2P55344 AC021146.10-201ENST00000515628 706 ntBASIC5.38□□□□□ -1.55
LIM2P55344 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 MRPS16P1-201ENST00000523462 412 ntBASIC5.38□□□□□ -1.55
LIM2P55344 EIF4EP5-201ENST00000528228 640 ntBASIC5.38□□□□□ -1.55
LIM2P55344 TRIM51DP-201ENST00000529746 596 ntBASIC5.38□□□□□ -1.55
LIM2P55344 AC139697.1-201ENST00000548429 745 ntBASIC5.38□□□□□ -1.55
LIM2P55344 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 AGGF1P7-201ENST00000562369 913 ntBASIC5.38□□□□□ -1.55
LIM2P55344 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.38□□□□□ -1.55
LIM2P55344 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 AC009962.1-201ENST00000567327 3813 ntBASIC5.38□□□□□ -1.55
LIM2P55344 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.38□□□□□ -1.55
LIM2P55344 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.38□□□□□ -1.55
LIM2P55344 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.38□□□□□ -1.55
LIM2P55344 AC015712.7-201ENST00000615211 635 ntBASIC5.38□□□□□ -1.55
LIM2P55344 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.38□□□□□ -1.55
LIM2P55344 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.38□□□□□ -1.55
LIM2P55344 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
LIM2P55344 OR13C1P-202ENST00000641378 2919 ntBASIC5.38□□□□□ -1.55
LIM2P55344 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.38□□□□□ -1.55
LIM2P55344 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
LIM2P55344 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.38□□□□□ -1.55
LIM2P55344 MRE11P1-201ENST00000464884 2127 ntBASIC5.38□□□□□ -1.55
LIM2P55344 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIM2P55344 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.38□□□□□ -1.55
LIM2P55344 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.37□□□□□ -1.55
LIM2P55344 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
LIM2P55344 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.37□□□□□ -1.55
LIM2P55344 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
LIM2P55344 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
LIM2P55344 RN7SKP15-201ENST00000364742 309 ntBASIC5.37□□□□□ -1.55
LIM2P55344 RN7SKP292-201ENST00000365522 317 ntBASIC5.37□□□□□ -1.55
LIM2P55344 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
LIM2P55344 RNU1-136P-201ENST00000384181 164 ntBASIC5.37□□□□□ -1.55
LIM2P55344 RNA5SP284-201ENST00000384547 118 ntBASIC5.37□□□□□ -1.55
LIM2P55344 RPS6P23-201ENST00000413224 722 ntBASIC5.37□□□□□ -1.55
LIM2P55344 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.37□□□□□ -1.55
LIM2P55344 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.37□□□□□ -1.55
LIM2P55344 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.37□□□□□ -1.55
LIM2P55344 BX119321.1-201ENST00000428912 797 ntBASIC5.37□□□□□ -1.55
LIM2P55344 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.37□□□□□ -1.55
LIM2P55344 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.37□□□□□ -1.55
LIM2P55344 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC5.37□□□□□ -1.55
LIM2P55344 BLNK-209ENST00000495266 440 ntTSL 5 BASIC5.37□□□□□ -1.55
LIM2P55344 AC090568.1-201ENST00000509499 856 ntBASIC5.37□□□□□ -1.55
LIM2P55344 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.37□□□□□ -1.55
LIM2P55344 RNU6-615P-201ENST00000516065 106 ntBASIC5.37□□□□□ -1.55
LIM2P55344 CYCSP22-201ENST00000517555 339 ntBASIC5.37□□□□□ -1.55
LIM2P55344 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.37□□□□□ -1.55
LIM2P55344 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.37□□□□□ -1.55
LIM2P55344 HSPE1P2-201ENST00000554777 306 ntBASIC5.37□□□□□ -1.55
LIM2P55344 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC5.37□□□□□ -1.55
LIM2P55344 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.37□□□□□ -1.55
LIM2P55344 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.37□□□□□ -1.55
LIM2P55344 DHFRP1-201ENST00000579682 559 ntBASIC5.37□□□□□ -1.55
LIM2P55344 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.37□□□□□ -1.55
LIM2P55344 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIM2P55344 AP003072.5-201ENST00000623872 773 ntBASIC5.37□□□□□ -1.55
LIM2P55344 AP001962.1-201ENST00000624114 559 ntBASIC5.37□□□□□ -1.55
LIM2P55344 AL390318.1-201ENST00000624564 687 ntBASIC5.37□□□□□ -1.55
LIM2P55344 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.37□□□□□ -1.55
LIM2P55344 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms