Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.8□□□□□ -1.48
MSH3P20585 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
MSH3P20585 AL161756.3-201ENST00000641216 2071 ntBASIC5.8□□□□□ -1.48
MSH3P20585 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.8□□□□□ -1.48
MSH3P20585 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.8□□□□□ -1.48
MSH3P20585 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 AC023490.2-201ENST00000359859 470 ntBASIC5.8□□□□□ -1.48
MSH3P20585 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 MIR1203-201ENST00000408812 85 ntBASIC5.8□□□□□ -1.48
MSH3P20585 AKR1B10P1-201ENST00000425765 942 ntBASIC5.8□□□□□ -1.48
MSH3P20585 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH3P20585 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
MSH3P20585 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH3P20585 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH3P20585 FCF1P7-201ENST00000451185 558 ntBASIC5.8□□□□□ -1.48
MSH3P20585 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.8□□□□□ -1.48
MSH3P20585 AC006499.4-201ENST00000510947 694 ntBASIC5.8□□□□□ -1.48
MSH3P20585 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH3P20585 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH3P20585 AL356801.1-201ENST00000559320 294 ntBASIC5.8□□□□□ -1.48
MSH3P20585 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.8□□□□□ -1.48
MSH3P20585 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.8□□□□□ -1.48
MSH3P20585 AP001357.1-201ENST00000586304 1053 ntBASIC5.8□□□□□ -1.48
MSH3P20585 AL359742.1-201ENST00000622497 540 ntBASIC5.8□□□□□ -1.48
MSH3P20585 AC132825.8-201ENST00000640783 297 ntBASIC5.8□□□□□ -1.48
MSH3P20585 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
MSH3P20585 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH3P20585 AL132656.3-201ENST00000606384 1595 ntBASIC5.8□□□□□ -1.48
MSH3P20585 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH3P20585 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.79□□□□□ -1.48
MSH3P20585 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
MSH3P20585 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
MSH3P20585 HMGN1P20-201ENST00000411849 300 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AC017078.1-201ENST00000416146 368 ntBASIC5.79□□□□□ -1.48
MSH3P20585 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 PCBP2P1-201ENST00000437262 977 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 PCNPP2-201ENST00000441651 455 ntBASIC5.79□□□□□ -1.48
MSH3P20585 RPS10P18-201ENST00000442662 495 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH3P20585 RSU1P1-201ENST00000453416 441 ntBASIC5.79□□□□□ -1.48
MSH3P20585 ST13P12-201ENST00000508958 1094 ntBASIC5.79□□□□□ -1.48
MSH3P20585 RNA5SP271-201ENST00000516700 88 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 AC090424.1-201ENST00000535243 736 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AL121594.2-201ENST00000541658 472 ntBASIC5.79□□□□□ -1.48
MSH3P20585 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH3P20585 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH3P20585 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH3P20585 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.79□□□□□ -1.48
MSH3P20585 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH3P20585 MIR3908-201ENST00000579798 126 ntBASIC5.79□□□□□ -1.48
MSH3P20585 COX6CP7-201ENST00000597056 208 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.79□□□□□ -1.48
MSH3P20585 AC108865.2-201ENST00000606881 432 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AL021368.1-201ENST00000607490 540 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AL365181.4-201ENST00000609800 547 ntBASIC5.79□□□□□ -1.48
MSH3P20585 AC006213.5-201ENST00000619673 288 ntBASIC5.79□□□□□ -1.48
MSH3P20585 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 MIR1910-201ENST00000636955 80 ntBASIC5.79□□□□□ -1.48
MSH3P20585 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.79□□□□□ -1.48
MSH3P20585 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.79□□□□□ -1.48
MSH3P20585 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.79□□□□□ -1.48
MSH3P20585 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.79□□□□□ -1.48
MSH3P20585 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH3P20585 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
MSH3P20585 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 CR383656.5-201ENST00000547616 1340 ntBASIC5.78□□□□□ -1.48
MSH3P20585 AL355488.2-201ENST00000609909 2850 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms