Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 AGGF1P7-201ENST00000562369 913 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 ATP5F1P7-201ENST00000567330 760 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 MIR5708-201ENST00000579723 85 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 FAM106CP-201ENST00000582212 507 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 MIR4999-201ENST00000585029 91 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 VN1R90P-201ENST00000595717 726 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 AL583832.1-201ENST00000603227 784 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC095055.1-201ENST00000603472 1113 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 RPS4XP21-201ENST00000603814 750 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AL390877.1-201ENST00000605704 214 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 5S_rRNA.23-201ENST00000612086 102 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AF246928.1-201ENST00000623768 87 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AP003072.4-201ENST00000624580 310 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 FP325313.1-201ENST00000638228 703 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 AC138915.4-201ENST00000565549 4147 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AP000526.1-201ENST00000603308 1388 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 AL358913.2-201ENST00000553881 1548 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
HOXA3O43365 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 OR56A4-201ENST00000330728 1209 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 CSN2-201ENST00000353151 1066 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
HOXA3O43365 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 OFD1P11Y-201ENST00000418213 1177 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 TRBV29OR9-2-201ENST00000427589 333 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 AC093716.1-201ENST00000435923 377 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 E2F6P3-201ENST00000441743 743 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 AL031681.1-201ENST00000443304 400 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 HSPE1P22-201ENST00000456856 327 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 RPS27AP2-201ENST00000457576 465 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 RN7SL70P-201ENST00000478322 302 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 AC131233.1-201ENST00000479200 955 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 AC079080.1-201ENST00000479841 822 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 PSG10P-201ENST00000501199 1500 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC5.61□□□□□ -1.51
HOXA3O43365 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HOXA3O43365 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.61□□□□□ -1.51
HOXA3O43365 IGLVV-66-201ENST00000523818 341 ntBASIC5.61□□□□□ -1.51
HOXA3O43365 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC5.61□□□□□ -1.51
HOXA3O43365 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms