Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AC079395.2-201ENST00000610982 737 ntBASIC7□□□□□ -1.29
RPAP1Q9BWH6 SDR42E1P1-201ENST00000611327 477 ntBASIC7□□□□□ -1.29
RPAP1Q9BWH6 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
RPAP1Q9BWH6 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
RPAP1Q9BWH6 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
RPAP1Q9BWH6 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC7□□□□□ -1.29
RPAP1Q9BWH6 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7□□□□□ -1.29
RPAP1Q9BWH6 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
RPAP1Q9BWH6 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 RN7SKP162-201ENST00000363605 345 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 NPM1P4-201ENST00000414095 812 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AL355433.1-201ENST00000422804 300 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AL662874.1-201ENST00000426065 230 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 DEFA9P-201ENST00000433042 285 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AC015983.1-201ENST00000441577 373 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AC011225.1-201ENST00000457751 369 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AC108693.1-201ENST00000496068 432 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AC018445.2-201ENST00000622987 260 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AL355488.2-201ENST00000609909 2850 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AC232271.1-201ENST00000602455 2715 ntBASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
RPAP1Q9BWH6 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 RN7SKP124-201ENST00000364730 341 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 AC019205.1-201ENST00000421830 730 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 EEF1B2P6-201ENST00000445713 673 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 RN7SL72P-201ENST00000460697 269 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 AC008410.1-201ENST00000483777 339 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 DUTP7-201ENST00000507982 486 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 MIR2117-201ENST00000516780 80 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 RNA5SP34-201ENST00000516887 130 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 AC078899.1-201ENST00000521432 1185 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 AC069542.2-201ENST00000624816 216 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 AL022323.4-201ENST00000623980 13120 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 AC009962.1-201ENST00000567327 3813 ntBASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
RPAP1Q9BWH6 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 MIR105-2-201ENST00000385083 81 ntBASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 RN7SKP17-201ENST00000411242 351 ntBASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 AC023141.8-201ENST00000442554 208 ntBASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 SPRYD7P1-201ENST00000443861 570 ntBASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 RPL12P39-201ENST00000455456 496 ntBASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 EIF3LP3-201ENST00000495197 822 ntBASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 AC136777.2-201ENST00000522979 358 ntBASIC6.97□□□□□ -1.29
RPAP1Q9BWH6 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms