Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
FOXF1Q12946 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
FOXF1Q12946 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.18□□□□□ -1.58
FOXF1Q12946 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.18□□□□□ -1.58
FOXF1Q12946 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC015689.2-201ENST00000528172 1738 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
FOXF1Q12946 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 EEF1B2P8-201ENST00000414101 671 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXF1Q12946 NME1P1-201ENST00000420914 382 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC079807.1-201ENST00000429993 481 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 AC144530.1-201ENST00000452862 555 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC090058.1-201ENST00000498788 435 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 PSMA2P2-201ENST00000504319 686 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC022826.1-201ENST00000519383 805 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.17□□□□□ -1.58
FOXF1Q12946 TRIM51DP-201ENST00000529746 596 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXF1Q12946 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXF1Q12946 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXF1Q12946 DPPA2P4-201ENST00000563717 878 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AP001496.3-201ENST00000580230 913 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC008521.2-201ENST00000591021 259 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AL035661.1-201ENST00000620459 1144 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AC007842.1-201ENST00000597336 2039 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.17□□□□□ -1.58
FOXF1Q12946 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
FOXF1Q12946 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.17□□□□□ -1.58
FOXF1Q12946 AL034546.1-201ENST00000623740 3693 ntBASIC5.17□□□□□ -1.58
FOXF1Q12946 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
FOXF1Q12946 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXF1Q12946 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXF1Q12946 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
FOXF1Q12946 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXF1Q12946 AC093671.1-201ENST00000624981 2929 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
FOXF1Q12946 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.16□□□□□ -1.58
FOXF1Q12946 RNA5SP394-201ENST00000364216 119 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 RN7SKP292-201ENST00000365522 317 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 RNA5SP30-201ENST00000365552 115 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXF1Q12946 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.16□□□□□ -1.58
FOXF1Q12946 RMRPP5-201ENST00000411156 267 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXF1Q12946 RPS6P23-201ENST00000413224 722 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
FOXF1Q12946 BX119321.1-201ENST00000428912 797 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXF1Q12946 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXF1Q12946 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXF1Q12946 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXF1Q12946 AC007998.1-201ENST00000474156 672 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXF1Q12946 RPS7P6-201ENST00000485777 579 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 AC090568.1-201ENST00000509499 856 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXF1Q12946 AC139697.1-201ENST00000548429 745 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXF1Q12946 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.16□□□□□ -1.58
FOXF1Q12946 HSPE1P2-201ENST00000554777 306 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.16□□□□□ -1.58
FOXF1Q12946 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
FOXF1Q12946 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.16□□□□□ -1.58
FOXF1Q12946 NANOGP3-201ENST00000605855 286 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 AL390318.1-201ENST00000624564 687 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 MIR193BHG-214ENST00000641765 509 ntBASIC5.16□□□□□ -1.58
FOXF1Q12946 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
FOXF1Q12946 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms