Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.84□□□□□ -1.47
MSH3P20585 AC066692.1-201ENST00000421721 457 ntBASIC5.84□□□□□ -1.47
MSH3P20585 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.84□□□□□ -1.47
MSH3P20585 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.84□□□□□ -1.47
MSH3P20585 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.84□□□□□ -1.47
MSH3P20585 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.84□□□□□ -1.47
MSH3P20585 EIF5AP4-201ENST00000441206 465 ntBASIC5.84□□□□□ -1.47
MSH3P20585 AC023141.8-201ENST00000442554 208 ntBASIC5.84□□□□□ -1.47
MSH3P20585 HMGN1P2-201ENST00000445197 310 ntBASIC5.84□□□□□ -1.47
MSH3P20585 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.84□□□□□ -1.47
MSH3P20585 OSTCP1-201ENST00000455507 450 ntBASIC5.84□□□□□ -1.47
MSH3P20585 SNRPCP3-201ENST00000474888 476 ntBASIC5.84□□□□□ -1.47
MSH3P20585 RN7SL57P-201ENST00000493687 290 ntBASIC5.84□□□□□ -1.47
MSH3P20585 TOMM22P4-201ENST00000511318 336 ntBASIC5.84□□□□□ -1.47
MSH3P20585 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.84□□□□□ -1.47
MSH3P20585 TRIM77BP-201ENST00000524985 1119 ntBASIC5.84□□□□□ -1.47
MSH3P20585 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.84□□□□□ -1.47
MSH3P20585 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 FAM27E4-201ENST00000605259 342 ntBASIC5.84□□□□□ -1.47
MSH3P20585 AC107905.1-201ENST00000616204 426 ntBASIC5.84□□□□□ -1.47
MSH3P20585 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.84□□□□□ -1.47
MSH3P20585 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 WDR95P-201ENST00000425638 1542 ntBASIC5.84□□□□□ -1.48
MSH3P20585 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
MSH3P20585 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.48
MSH3P20585 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
MSH3P20585 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 AL137058.3-201ENST00000624531 3099 ntBASIC5.83□□□□□ -1.48
MSH3P20585 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 OR4G1P-202ENST00000641173 1788 ntBASIC5.83□□□□□ -1.48
MSH3P20585 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.83□□□□□ -1.48
MSH3P20585 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 TMSB4XP2-201ENST00000335179 210 ntBASIC5.83□□□□□ -1.48
MSH3P20585 RN7SKP186-201ENST00000365371 303 ntBASIC5.83□□□□□ -1.48
MSH3P20585 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.83□□□□□ -1.48
MSH3P20585 AL354890.1-201ENST00000413730 346 ntBASIC5.83□□□□□ -1.48
MSH3P20585 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.83□□□□□ -1.48
MSH3P20585 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 AC002069.1-201ENST00000429649 1159 ntBASIC5.83□□□□□ -1.48
MSH3P20585 AC097523.2-201ENST00000435551 652 ntBASIC5.83□□□□□ -1.48
MSH3P20585 NDUFS5P5-201ENST00000437256 321 ntBASIC5.83□□□□□ -1.48
MSH3P20585 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.83□□□□□ -1.48
MSH3P20585 DNAJA1P5-201ENST00000440278 943 ntBASIC5.83□□□□□ -1.48
MSH3P20585 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
MSH3P20585 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.83□□□□□ -1.48
MSH3P20585 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 RNU1-88P-201ENST00000459274 128 ntBASIC5.83□□□□□ -1.48
MSH3P20585 GTF2IP11-201ENST00000526931 420 ntBASIC5.83□□□□□ -1.48
MSH3P20585 EIF1AXP2-201ENST00000555940 413 ntBASIC5.83□□□□□ -1.48
MSH3P20585 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.83□□□□□ -1.48
MSH3P20585 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.83□□□□□ -1.48
MSH3P20585 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.83□□□□□ -1.48
MSH3P20585 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.83□□□□□ -1.48
MSH3P20585 AL163952.1-202ENST00000569625 600 ntBASIC5.83□□□□□ -1.48
MSH3P20585 OOSP1P2-201ENST00000579644 351 ntBASIC5.83□□□□□ -1.48
MSH3P20585 MIR4433B-201ENST00000581329 102 ntBASIC5.83□□□□□ -1.48
MSH3P20585 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.83□□□□□ -1.48
MSH3P20585 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.83□□□□□ -1.48
MSH3P20585 MIR6778-201ENST00000617912 73 ntBASIC5.83□□□□□ -1.48
MSH3P20585 FO681491.1-202ENST00000623392 737 ntBASIC5.83□□□□□ -1.48
MSH3P20585 AC000095.2-202ENST00000637415 154 ntBASIC5.83□□□□□ -1.48
MSH3P20585 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
MSH3P20585 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.83□□□□□ -1.48
MSH3P20585 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSH3P20585 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
MSH3P20585 AC025470.1-201ENST00000510053 2032 ntBASIC5.82□□□□□ -1.48
MSH3P20585 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 AC233968.1-201ENST00000611212 1300 ntBASIC5.82□□□□□ -1.48
MSH3P20585 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.82□□□□□ -1.48
MSH3P20585 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 AC126120.1-201ENST00000431082 470 ntBASIC5.82□□□□□ -1.48
MSH3P20585 DEFA9P-201ENST00000433042 285 ntBASIC5.82□□□□□ -1.48
MSH3P20585 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.82□□□□□ -1.48
MSH3P20585 NDUFA5P5-201ENST00000468361 342 ntBASIC5.82□□□□□ -1.48
MSH3P20585 AC079080.1-201ENST00000479841 822 ntBASIC5.82□□□□□ -1.48
MSH3P20585 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 354.8 ms