Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.41□□□□□ -1.54
UPK1AO00322 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.41□□□□□ -1.54
UPK1AO00322 IGLV3-30-201ENST00000524362 298 ntBASIC5.41□□□□□ -1.54
UPK1AO00322 AC107958.1-201ENST00000556576 290 ntBASIC5.41□□□□□ -1.54
UPK1AO00322 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.41□□□□□ -1.54
UPK1AO00322 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
UPK1AO00322 MIR4271-201ENST00000582451 67 ntBASIC5.41□□□□□ -1.54
UPK1AO00322 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.41□□□□□ -1.54
UPK1AO00322 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.41□□□□□ -1.54
UPK1AO00322 AL035661.1-201ENST00000620459 1144 ntBASIC5.41□□□□□ -1.54
UPK1AO00322 AP000550.3-201ENST00000637734 379 ntBASIC5.41□□□□□ -1.54
UPK1AO00322 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
UPK1AO00322 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
UPK1AO00322 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
UPK1AO00322 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
UPK1AO00322 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
UPK1AO00322 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
UPK1AO00322 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
UPK1AO00322 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.4□□□□□ -1.54
UPK1AO00322 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
UPK1AO00322 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
UPK1AO00322 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
UPK1AO00322 MAPK10-328ENST00000641553 4009 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
UPK1AO00322 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.4□□□□□ -1.54
UPK1AO00322 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.4□□□□□ -1.54
UPK1AO00322 RN7SKP275-201ENST00000364626 301 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 SUGT1P2-201ENST00000379452 992 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
UPK1AO00322 U3.23-201ENST00000391132 200 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.4□□□□□ -1.54
UPK1AO00322 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.4□□□□□ -1.54
UPK1AO00322 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.4□□□□□ -1.54
UPK1AO00322 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.4□□□□□ -1.54
UPK1AO00322 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.4□□□□□ -1.54
UPK1AO00322 OR10T1P-201ENST00000424327 947 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 RPS10P18-201ENST00000442662 495 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.4□□□□□ -1.54
UPK1AO00322 AL359839.1-201ENST00000451975 1160 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.4□□□□□ -1.54
UPK1AO00322 RN7SL741P-201ENST00000482473 289 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 RPS17P5-201ENST00000498293 408 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.4□□□□□ -1.54
UPK1AO00322 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.4□□□□□ -1.54
UPK1AO00322 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.4□□□□□ -1.54
UPK1AO00322 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.4□□□□□ -1.54
UPK1AO00322 DPPA3P2-202ENST00000557188 1219 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
UPK1AO00322 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.4□□□□□ -1.54
UPK1AO00322 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
UPK1AO00322 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.4□□□□□ -1.54
UPK1AO00322 AC129778.1-202ENST00000623812 261 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 AL591379.1-207ENST00000635982 261 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.4□□□□□ -1.54
UPK1AO00322 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
UPK1AO00322 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
UPK1AO00322 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.4□□□□□ -1.55
UPK1AO00322 AL161912.4-201ENST00000623889 2468 ntBASIC5.4□□□□□ -1.55
UPK1AO00322 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.4□□□□□ -1.55
UPK1AO00322 AC002525.1-201ENST00000624392 1622 ntBASIC5.4□□□□□ -1.55
UPK1AO00322 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.4□□□□□ -1.55
UPK1AO00322 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
UPK1AO00322 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.39□□□□□ -1.55
UPK1AO00322 AP005435.3-201ENST00000531260 3198 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.39□□□□□ -1.55
UPK1AO00322 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
UPK1AO00322 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
UPK1AO00322 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
UPK1AO00322 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.39□□□□□ -1.55
UPK1AO00322 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
UPK1AO00322 AC092376.2-201ENST00000622621 4116 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
UPK1AO00322 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
UPK1AO00322 AC107977.1-201ENST00000355745 939 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 RNU1-150P-201ENST00000362491 162 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.39□□□□□ -1.55
UPK1AO00322 SNORA70.6-201ENST00000383934 134 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 MIR1203-201ENST00000408812 85 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 AL357752.1-201ENST00000412817 349 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.39□□□□□ -1.55
UPK1AO00322 VN1R21P-201ENST00000426703 765 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 AC126120.1-201ENST00000431082 470 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.39□□□□□ -1.55
UPK1AO00322 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC5.39□□□□□ -1.55
UPK1AO00322 PCBP2P1-201ENST00000437262 977 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.39□□□□□ -1.55
UPK1AO00322 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
UPK1AO00322 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 SNORA70.11-201ENST00000515987 138 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 SNORA70.13-201ENST00000516116 138 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.39□□□□□ -1.55
UPK1AO00322 AC139365.2-201ENST00000517972 253 ntBASIC5.39□□□□□ -1.55
UPK1AO00322 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms