Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 SNORA74.4-201ENST00000607595 199 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 CXADRP3-202ENST00000617265 1100 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 AC073592.7-201ENST00000623659 507 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 AP001052.1-201ENST00000626421 99 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 CASC19-274ENST00000642018 970 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 GTF2IP4-201ENST00000453092 2054 ntBASIC5.17□□□□□ -1.58
NKX3-1Q99801 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
NKX3-1Q99801 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NKX3-1Q99801 LINC01613-201ENST00000561476 2780 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC093671.1-201ENST00000624981 2929 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 RNU6-564P-201ENST00000410983 104 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 RPS15AP30-201ENST00000420976 390 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 KIF4CP-201ENST00000422742 1279 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC106901.1-201ENST00000425086 698 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 RPL12P39-201ENST00000455456 496 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC090058.1-201ENST00000498788 435 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC108103.1-201ENST00000511286 446 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 RNA5SP473-201ENST00000516402 125 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 OR4A42P-201ENST00000531397 938 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AP005131.7-201ENST00000610087 611 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 MIR6071-201ENST00000616741 78 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 MIR6811-201ENST00000620409 58 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC020763.5-201ENST00000623298 430 ntBASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
NKX3-1Q99801 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NKX3-1Q99801 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
NKX3-1Q99801 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
NKX3-1Q99801 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.58
NKX3-1Q99801 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
NKX3-1Q99801 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.15□□□□□ -1.58
NKX3-1Q99801 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
NKX3-1Q99801 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
NKX3-1Q99801 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
NKX3-1Q99801 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.15□□□□□ -1.58
NKX3-1Q99801 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 MTND4LP21-201ENST00000415303 295 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 RPL12P43-201ENST00000420608 499 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
NKX3-1Q99801 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC114878.1-201ENST00000441166 358 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 RPL5P10-201ENST00000445207 894 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 RPL38P3-201ENST00000484463 213 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 RN7SL170P-201ENST00000487098 295 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 RPL37P23-201ENST00000492641 294 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms