Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AL161722.1-201ENST00000446972 1032 ntBASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 OR7E116P-201ENST00000448529 957 ntBASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 MEMO1P4-201ENST00000453590 386 ntBASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 MIR4260-201ENST00000583107 67 ntBASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 NANOGP3-201ENST00000605855 286 ntBASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 AL034546.1-201ENST00000623740 3693 ntBASIC6.43□□□□□ -1.38
CCDC65Q8IXS2 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 TMSB4XP2-201ENST00000335179 210 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 RNA5SP500-201ENST00000364486 119 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 RNA5SP91-201ENST00000390902 119 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 RN7SKP17-201ENST00000411242 351 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 RN7SKP279-201ENST00000411383 298 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AL359839.1-201ENST00000451975 1160 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 ACA64.1-201ENST00000459171 127 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 HMGN2P36-201ENST00000529541 409 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 TOMM20P1-201ENST00000534518 427 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC65Q8IXS2 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AC107977.1-201ENST00000355745 939 ntBASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 RN7SKP275-201ENST00000364626 301 ntBASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 PEX12P1-201ENST00000400284 1048 ntBASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 MIR1203-201ENST00000408812 85 ntBASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 MRPL53P1-201ENST00000414323 319 ntBASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC65Q8IXS2 AC074255.1-201ENST00000511259 501 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms