Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HLA-DMBP28068 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HLA-DMBP28068 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL031595.2-201ENST00000624215 19071 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL137058.3-201ENST00000624531 3099 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 RNA5SP453-201ENST00000362503 119 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 RN7SKP77-201ENST00000363261 353 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 HSD17B7P1-201ENST00000412419 1017 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC130360.1-201ENST00000425489 1117 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL445928.1-201ENST00000435545 222 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC094085.1-201ENST00000468914 584 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC006539.1-201ENST00000481419 501 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 RN7SKP35-201ENST00000517210 151 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC130365.2-201ENST00000525882 1201 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC126615.2-201ENST00000553003 515 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC092332.1-201ENST00000563684 829 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 STARD6-202ENST00000577499 696 ntTSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 MIR4701-201ENST00000583094 63 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL513327.3-201ENST00000602618 469 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL022394.1-201ENST00000606979 292 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AP001962.1-201ENST00000624114 559 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC073488.3-201ENST00000631611 778 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 OR11H2-202ENST00000641517 1085 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 MTND5P12-201ENST00000502851 1449 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HLA-DMBP28068 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 CPS1-IT1-201ENST00000628368 2306 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AC027279.4-201ENST00000624371 2072 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 FBXL21-201ENST00000297158 1305 ntBASIC4.44□□□□□ -1.7
HLA-DMBP28068 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC4.44□□□□□ -1.7
HLA-DMBP28068 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC006484.1-201ENST00000435086 1884 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 MFSD8-239ENST00000641590 2479 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 RN7SKP78-201ENST00000364711 318 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 SNORA51.9-201ENST00000384295 124 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 RPS14P4-201ENST00000415880 418 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 RPS4XP5-201ENST00000419038 768 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC079807.1-201ENST00000429993 481 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AL353662.1-201ENST00000439099 327 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 ATP5LP2-201ENST00000440646 311 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms