Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AC073648.3-201ENST00000504939 925 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 GAPDHP62-201ENST00000515313 990 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AC110056.1-201ENST00000525759 911 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 MED31-202ENST00000574128 619 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 MIR4732-201ENST00000581873 76 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AL512430.4-201ENST00000603085 613 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AL049829.3-202ENST00000604278 711 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AL078624.2-201ENST00000605063 554 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AL451049.1-201ENST00000608672 497 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 AC006387.1-201ENST00000626365 671 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 CLUHP10-201ENST00000631979 980 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 OR55B1P-203ENST00000641518 2602 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 EIF3EP1-201ENST00000433978 1316 ntBASIC5.19□□□□□ -1.58
CCDC58Q4VC31 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC58Q4VC31 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 RN7SKP78-201ENST00000364711 318 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 MIR138-2-201ENST00000384916 84 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 RNA5SP91-201ENST00000390902 119 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 HYALP1-201ENST00000417674 1279 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 OR10T1P-201ENST00000424327 947 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC128677.1-201ENST00000436016 442 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AL591623.2-201ENST00000449978 222 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 RN7SL267P-201ENST00000485107 261 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 SNORA74.1-201ENST00000516320 180 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 ZNF677-211ENST00000601828 719 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AC068726.1-201ENST00000610993 341 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AL357562.1-201ENST00000624911 609 ntBASIC5.18□□□□□ -1.58
CCDC58Q4VC31 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC58Q4VC31 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 MAPK10-349ENST00000641767 3661 ntBASIC5.17□□□□□ -1.58
CCDC58Q4VC31 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 SNORA21-201ENST00000362423 132 ntBASIC5.17□□□□□ -1.58
CCDC58Q4VC31 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC58Q4VC31 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms