Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 AC126177.5-201ENST00000549599 178 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 AL683813.2-201ENST00000605245 502 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 AC132068.1-201ENST00000623805 459 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 AL117378.2-201ENST00000622916 1337 ntBASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC88AQ3V6T2 MIR133B-201ENST00000362210 119 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 MRRF-207ENST00000373729 870 ntTSL 3 BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 AC013442.1-201ENST00000397347 228 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 SLC35E1P1-201ENST00000419313 864 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 LDHBP2-201ENST00000456969 1005 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 RN7SL738P-201ENST00000470264 297 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 AC022832.1-201ENST00000530718 645 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 AL139099.4-201ENST00000614802 114 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 MIR7641-1-201ENST00000627518 61 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 AC114876.1-201ENST00000490962 1366 ntBASIC7.02□□□□□ -1.28
CCDC88AQ3V6T2 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AL662795.2-201ENST00000624252 3706 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 HSPA8P18-201ENST00000439846 1928 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AC092724.1-201ENST00000624623 3397 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 RNA5SP87-201ENST00000384155 118 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 MIR130A-201ENST00000385274 89 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AC005297.1-201ENST00000444765 862 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AL389915.2-201ENST00000454576 441 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 RPL7P6-201ENST00000480903 738 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 RPL38P3-201ENST00000484463 213 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 MRPS21P7-201ENST00000566937 238 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 MIR4330-201ENST00000579077 105 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AF230666.2-201ENST00000602328 725 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 CYP4F35P-202ENST00000636121 390 ntBASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC88AQ3V6T2 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 AC005224.3-201ENST00000584683 2140 ntBASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 HIST1H3PS1-201ENST00000404612 417 ntBASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 SNORA11-201ENST00000408789 128 ntBASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC88AQ3V6T2 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms