Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 AL121886.1-201ENST00000358609 435 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC092634.1-201ENST00000366505 199 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 SNRPEP6-201ENST00000407465 277 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC4.26□□□□□ -1.73
FOXA3P55318 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXA3P55318 GPN3P1-201ENST00000423883 535 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 SEPT14P12-201ENST00000442280 560 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 OR52I1-201ENST00000450052 1050 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 OR52E3P-201ENST00000452083 936 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 AP000797.2-201ENST00000475768 606 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 ATP5LP5-201ENST00000483050 299 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC069304.1-201ENST00000491593 704 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC095052.1-201ENST00000509955 863 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 IGLV3-24-201ENST00000517477 197 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 C8orf44-205ENST00000521889 598 ntAPPRIS ALT2 TSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 IGHVIII-76-1-201ENST00000523776 286 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 DACT3-AS1-202ENST00000525008 496 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXA3P55318 AC122688.1-201ENST00000541494 223 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.26□□□□□ -1.73
FOXA3P55318 DHFRP1-201ENST00000579682 559 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 LINC01396-201ENST00000609099 527 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 AC026367.3-201ENST00000619032 590 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC103564.3-201ENST00000621194 220 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA3P55318 AC099654.6-201ENST00000636487 512 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXA3P55318 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
FOXA3P55318 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXA3P55318 AC079097.1-201ENST00000512187 1399 ntBASIC4.26□□□□□ -1.73
FOXA3P55318 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
FOXA3P55318 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXA3P55318 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXA3P55318 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 ADAM5-202ENST00000399789 1942 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 AC133552.1-201ENST00000569988 4007 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
FOXA3P55318 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
FOXA3P55318 Y_RNA.209-201ENST00000364156 111 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
FOXA3P55318 RNA5SP241-201ENST00000391326 114 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 COX5BP7-201ENST00000414780 274 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA3P55318 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA3P55318 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 RPS19P6-201ENST00000441327 433 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC023141.8-201ENST00000442554 208 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC016772.1-201ENST00000444170 1261 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXA3P55318 AC023245.1-201ENST00000468501 517 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 RN7SL188P-201ENST00000469842 285 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC023424.1-201ENST00000496058 459 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC4.25□□□□□ -1.73
FOXA3P55318 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA3P55318 NREP-217ENST00000509025 987 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA3P55318 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXA3P55318 MAST4-IT1-201ENST00000514241 658 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 NREP-223ENST00000515855 801 ntTSL 4 BASIC4.25□□□□□ -1.73
FOXA3P55318 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.25□□□□□ -1.73
FOXA3P55318 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA3P55318 AC139697.1-201ENST00000548429 745 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC089984.3-201ENST00000552838 363 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXA3P55318 AC040958.1-201ENST00000561102 201 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC005632.2-201ENST00000564271 828 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC006272.2-201ENST00000594725 163 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA3P55318 AC009237.13-201ENST00000603193 276 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms