Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL6A1P12109 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC7.08□□□□□ -1.28
COL6A1P12109 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 AC022022.2-201ENST00000602989 360 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AC027334.1-201ENST00000603257 310 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AL049844.2-201ENST00000604280 628 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AP005431.1-201ENST00000618479 319 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AC112694.2-201ENST00000623697 768 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC7.08□□□□□ -1.28
COL6A1P12109 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC7.08□□□□□ -1.28
COL6A1P12109 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
COL6A1P12109 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL6A1P12109 AC125238.2-201ENST00000430003 1440 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 AP005139.1-201ENST00000580702 1647 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 OR13C1P-202ENST00000641378 2919 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
COL6A1P12109 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
COL6A1P12109 TMSB4XP2-201ENST00000335179 210 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 MIR105-2-201ENST00000385083 81 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 MIR541-201ENST00000401360 84 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 AL157884.1-201ENST00000424561 454 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AL512637.2-201ENST00000431287 1256 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 AC016908.1-201ENST00000442571 1219 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 RPL36AP39-201ENST00000445859 318 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AL451063.1-201ENST00000450164 1133 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 HIGD1AP16-201ENST00000450986 258 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC7.07□□□□□ -1.28
COL6A1P12109 NAMPTP2-201ENST00000505629 1115 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AC093720.1-201ENST00000505681 714 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 OR8G5-201ENST00000524943 1041 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 OR4A42P-201ENST00000531397 938 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC7.07□□□□□ -1.28
COL6A1P12109 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 FCF1-203ENST00000553615 954 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC7.07□□□□□ -1.28
COL6A1P12109 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC7.07□□□□□ -1.28
COL6A1P12109 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC7.07□□□□□ -1.28
COL6A1P12109 AC234772.3-201ENST00000602277 528 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AC025171.4-201ENST00000607250 1047 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 MIR6730-201ENST00000622213 67 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AC097460.3-201ENST00000623099 442 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 AC126544.2-201ENST00000625174 749 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 WDR75-207ENST00000631047 270 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 AL590396.4-201ENST00000636779 956 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 SPATA31C2-201ENST00000324915 3777 ntBASIC7.07□□□□□ -1.28
COL6A1P12109 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
COL6A1P12109 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC7.07□□□□□ -1.28
COL6A1P12109 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL6A1P12109 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 TMEM161BP1-201ENST00000457388 1457 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 SAGE3P-201ENST00000619800 1635 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
COL6A1P12109 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 RNU1-150P-201ENST00000362491 162 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
COL6A1P12109 MIR1203-201ENST00000408812 85 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC7.06□□□□□ -1.28
COL6A1P12109 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC7.06□□□□□ -1.28
COL6A1P12109 RPL12P28-201ENST00000430852 489 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 NDUFS5P5-201ENST00000437256 321 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 AL163193.1-201ENST00000444895 788 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 VN1R38P-201ENST00000450265 887 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC7.06□□□□□ -1.28
COL6A1P12109 AC002553.3-201ENST00000453002 341 ntBASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms