Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
APOEP02649 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
APOEP02649 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
APOEP02649 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.14□□□□□ -1.43
APOEP02649 AC087516.1-201ENST00000561236 2428 ntBASIC6.14□□□□□ -1.43
APOEP02649 AC005005.4-201ENST00000623789 16698 ntBASIC6.13□□□□□ -1.43
APOEP02649 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.13□□□□□ -1.43
APOEP02649 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.13□□□□□ -1.43
APOEP02649 AL359955.1-201ENST00000455242 3275 ntBASIC6.13□□□□□ -1.43
APOEP02649 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.13□□□□□ -1.43
APOEP02649 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 MIR1203-201ENST00000408812 85 ntBASIC6.13□□□□□ -1.43
APOEP02649 AC126120.1-201ENST00000431082 470 ntBASIC6.13□□□□□ -1.43
APOEP02649 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.13□□□□□ -1.43
APOEP02649 PCBP2P1-201ENST00000437262 977 ntBASIC6.13□□□□□ -1.43
APOEP02649 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.13□□□□□ -1.43
APOEP02649 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.13□□□□□ -1.43
APOEP02649 AL603882.1-201ENST00000463059 681 ntBASIC6.13□□□□□ -1.43
APOEP02649 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.13□□□□□ -1.43
APOEP02649 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.13□□□□□ -1.43
APOEP02649 OR7E158P-201ENST00000524483 910 ntBASIC6.13□□□□□ -1.43
APOEP02649 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.13□□□□□ -1.43
APOEP02649 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.13□□□□□ -1.43
APOEP02649 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.13□□□□□ -1.43
APOEP02649 COX6CP7-201ENST00000597056 208 ntBASIC6.13□□□□□ -1.43
APOEP02649 AL049840.6-201ENST00000604583 345 ntBASIC6.13□□□□□ -1.43
APOEP02649 AC145423.1-201ENST00000605712 336 ntBASIC6.13□□□□□ -1.43
APOEP02649 AC093388.1-201ENST00000609166 430 ntBASIC6.13□□□□□ -1.43
APOEP02649 AP001962.1-201ENST00000624114 559 ntBASIC6.13□□□□□ -1.43
APOEP02649 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.13□□□□□ -1.43
APOEP02649 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
APOEP02649 PDZK1P1-202ENST00000425209 1350 ntBASIC6.13□□□□□ -1.43
APOEP02649 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.13□□□□□ -1.43
APOEP02649 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.13□□□□□ -1.43
APOEP02649 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.13□□□□□ -1.43
APOEP02649 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
APOEP02649 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.12□□□□□ -1.43
APOEP02649 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 RPS3P2-201ENST00000421346 701 ntBASIC6.12□□□□□ -1.43
APOEP02649 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.12□□□□□ -1.43
APOEP02649 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.12□□□□□ -1.43
APOEP02649 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
APOEP02649 NPM1P21-201ENST00000513394 762 ntBASIC6.12□□□□□ -1.43
APOEP02649 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC6.12□□□□□ -1.43
APOEP02649 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.12□□□□□ -1.43
APOEP02649 NANOGNBP2-201ENST00000544753 553 ntBASIC6.12□□□□□ -1.43
APOEP02649 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.12□□□□□ -1.43
APOEP02649 AC006530.1-201ENST00000555980 571 ntBASIC6.12□□□□□ -1.43
APOEP02649 AL356801.1-201ENST00000559320 294 ntBASIC6.12□□□□□ -1.43
APOEP02649 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC6.12□□□□□ -1.43
APOEP02649 ZNF322P1-201ENST00000568013 1209 ntBASIC6.12□□□□□ -1.43
APOEP02649 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
APOEP02649 AC005224.3-201ENST00000584683 2140 ntBASIC6.12□□□□□ -1.43
APOEP02649 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.12□□□□□ -1.43
APOEP02649 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.12□□□□□ -1.43
APOEP02649 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
APOEP02649 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.12□□□□□ -1.43
APOEP02649 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.11□□□□□ -1.43
APOEP02649 AL161756.3-201ENST00000641216 2071 ntBASIC6.11□□□□□ -1.43
APOEP02649 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
APOEP02649 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
APOEP02649 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.11□□□□□ -1.43
APOEP02649 AL049634.1-201ENST00000453770 1720 ntBASIC6.11□□□□□ -1.43
APOEP02649 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
APOEP02649 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
APOEP02649 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
APOEP02649 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
APOEP02649 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.11□□□□□ -1.43
APOEP02649 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
APOEP02649 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.11□□□□□ -1.43
APOEP02649 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
APOEP02649 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms