Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 AC005726.4-201ENST00000582858 458 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 AL161912.3-201ENST00000605404 628 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 AC145423.1-201ENST00000605712 336 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 AL139099.4-201ENST00000614802 114 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC025470.1-201ENST00000510053 2032 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 TET1P1-201ENST00000426627 2301 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS35Q96QK1 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC004656.1-201ENST00000568479 4951 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 RNU1-59P-201ENST00000364829 162 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
VPS35Q96QK1 AL365220.1-201ENST00000432923 399 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 NDUFS5P5-201ENST00000437256 321 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AL138899.2-201ENST00000439139 499 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AL663074.2-201ENST00000440621 479 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 NDUFA5P5-201ENST00000468361 342 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC090058.1-201ENST00000498788 435 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 AL356801.1-201ENST00000559320 294 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 AL365181.4-201ENST00000609800 547 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 U1.25-201ENST00000614085 162 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 MIR6778-201ENST00000617912 73 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 U1.34-201ENST00000618578 162 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 U1.31-201ENST00000620022 160 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC009950.2-201ENST00000636548 183 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AC120036.2-201ENST00000509729 1474 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 AP000473.2-201ENST00000602659 1537 ntBASIC5.87□□□□□ -1.47
VPS35Q96QK1 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VPS35Q96QK1 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
VPS35Q96QK1 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 AC010266.2-201ENST00000564741 3255 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 RNU1-150P-201ENST00000362491 162 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 AL603882.1-201ENST00000463059 681 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 AC090602.1-201ENST00000469695 252 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 PFN1P6-201ENST00000476786 399 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 GAPDHP71-201ENST00000511530 1003 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 RN7SKP288-201ENST00000516227 268 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 PCNAP4-201ENST00000532690 730 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 NANOGNBP2-201ENST00000544753 553 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 NDUFA5P11-201ENST00000567995 343 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 AC107993.1-201ENST00000591343 684 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 AC002069.2-201ENST00000603580 883 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 AL096712.1-201ENST00000614561 159 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 AC129915.3-201ENST00000634128 948 ntBASIC5.86□□□□□ -1.47
VPS35Q96QK1 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS35Q96QK1 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
VPS35Q96QK1 AL137058.3-201ENST00000624531 3099 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms