Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RPL11P3-201ENST00000395256 523 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AL035422.1-201ENST00000414193 397 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC092865.3-201ENST00000425390 1026 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AL663074.2-201ENST00000440621 479 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC010240.2-201ENST00000445363 1205 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 FRG2FP-204ENST00000453982 852 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 RPL29P23-201ENST00000486188 442 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 GUSBP9-201ENST00000510138 584 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 MRPS21P8-201ENST00000569196 235 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC090826.1-203ENST00000569235 490 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC004232.2-201ENST00000574245 821 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC060780.2-201ENST00000589047 198 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC073389.3-201ENST00000609434 935 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AP003400.2-201ENST00000624036 666 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC138907.8-201ENST00000623981 2256 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 HSPD1P7-201ENST00000447985 1686 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AL158152.1-201ENST00000602652 1435 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS39Q96JC1 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 GNL2P1-201ENST00000451274 2190 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS39Q96JC1 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS39Q96JC1 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS39Q96JC1 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS39Q96JC1 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS39Q96JC1 RN7SKP250-201ENST00000363924 321 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 U3.10-201ENST00000364459 214 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 SNRPEP6-201ENST00000407465 277 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC023141.3-201ENST00000436698 278 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 RPS12P17-201ENST00000438591 377 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 RPS7P3-201ENST00000443360 580 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC009963.4-201ENST00000448535 339 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 RNU1-88P-201ENST00000459274 128 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC098818.1-201ENST00000478593 252 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 RN7SL362P-201ENST00000494228 267 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC113367.2-201ENST00000505749 160 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 MAST4-IT1-201ENST00000514241 658 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AL121594.2-201ENST00000541658 472 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC126615.2-201ENST00000553003 515 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC011500.1-201ENST00000601963 469 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 VN1R81P-201ENST00000602085 372 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 FAM27E2-201ENST00000619668 403 ntBASIC5.9□□□□□ -1.46
VPS39Q96JC1 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS39Q96JC1 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
VPS39Q96JC1 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS39Q96JC1 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS39Q96JC1 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS39Q96JC1 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
VPS39Q96JC1 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS39Q96JC1 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.9□□□□□ -1.47
VPS39Q96JC1 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS39Q96JC1 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS39Q96JC1 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms