Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF658B-201ENST00000602828 3408 ntBASIC6.08□□□□□ -1.44
COL4A4P53420 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL4A4P53420 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A4P53420 ATM-215ENST00000530958 5718 ntTSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL4A4P53420 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL4A4P53420 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL4A4P53420 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A4P53420 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
COL4A4P53420 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A4P53420 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 RNA5SP335-201ENST00000363817 110 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 AL390774.1-201ENST00000411924 246 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AC019205.1-201ENST00000421830 730 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.07□□□□□ -1.44
COL4A4P53420 OR6D1P-201ENST00000436165 939 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AC023141.8-201ENST00000442554 208 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 AC018552.1-201ENST00000562099 811 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 MIR4260-201ENST00000583107 67 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 LINC01739-205ENST00000641890 573 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 MFSD8-239ENST00000641590 2479 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 AC232271.1-201ENST00000602455 2715 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
COL4A4P53420 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 IMMTP1-201ENST00000435590 2219 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 GAPDHP42-201ENST00000406848 981 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 AL603882.1-201ENST00000463059 681 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A4P53420 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 AC015864.1-201ENST00000496512 544 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A4P53420 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A4P53420 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A4P53420 MRPS21P7-201ENST00000566937 238 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 MIR4646-201ENST00000580775 63 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A4P53420 IGLCOR22-2-201ENST00000605398 313 ntBASIC6.07□□□□□ -1.44
COL4A4P53420 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A4P53420 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
COL4A4P53420 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A4P53420 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
COL4A4P53420 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL4A4P53420 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.06□□□□□ -1.44
COL4A4P53420 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL4A4P53420 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL4A4P53420 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.06□□□□□ -1.44
COL4A4P53420 GNAS-202ENST00000306090 477 ntTSL 5 BASIC6.06□□□□□ -1.44
COL4A4P53420 RN7SKP104-201ENST00000362605 328 ntBASIC6.06□□□□□ -1.44
COL4A4P53420 RNA5SP87-201ENST00000384155 118 ntBASIC6.06□□□□□ -1.44
COL4A4P53420 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms