Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC7.1□□□□□ -1.27
COL6A1P12109 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL6A1P12109 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
COL6A1P12109 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
COL6A1P12109 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
COL6A1P12109 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC7.09□□□□□ -1.27
COL6A1P12109 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC7.09□□□□□ -1.27
COL6A1P12109 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 RNFT1P3-201ENST00000340898 1052 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 SNORA27.3-201ENST00000364937 134 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 U3.43-201ENST00000410734 213 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC7.09□□□□□ -1.27
COL6A1P12109 HNRNPA1P18-201ENST00000433537 927 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 RAB9AP5-201ENST00000437794 597 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AL606490.8-201ENST00000441624 319 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 RAB9AP2-201ENST00000443911 597 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AC002486.2-201ENST00000447806 590 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC7.09□□□□□ -1.27
COL6A1P12109 AC104164.3-201ENST00000467363 1258 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC7.09□□□□□ -1.27
COL6A1P12109 AC010468.3-201ENST00000508225 458 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC7.09□□□□□ -1.27
COL6A1P12109 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC7.09□□□□□ -1.27
COL6A1P12109 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC7.09□□□□□ -1.27
COL6A1P12109 UBTFL10-201ENST00000528532 562 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AC092375.1-201ENST00000550410 637 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 WDR61-205ENST00000558459 884 ntTSL 3 BASIC7.09□□□□□ -1.27
COL6A1P12109 AC090651.1-201ENST00000567865 634 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC7.09□□□□□ -1.27
COL6A1P12109 AC092121.1-201ENST00000569452 202 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AC090236.2-201ENST00000587933 1101 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 MTCO2P2-201ENST00000591258 225 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC7.09□□□□□ -1.27
COL6A1P12109 AP001823.1-201ENST00000604056 1003 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AL356986.1-201ENST00000604085 341 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 KATNBL1P5-201ENST00000605015 517 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 RN7SL787P-201ENST00000613000 284 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AC026367.3-201ENST00000619032 590 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 AC007275.1-201ENST00000621243 671 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 AC015871.3-201ENST00000618835 2261 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 AC023245.2-201ENST00000530760 2978 ntBASIC7.09□□□□□ -1.27
COL6A1P12109 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
COL6A1P12109 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL6A1P12109 RBPJP7-201ENST00000442803 1447 ntBASIC7.09□□□□□ -1.28
COL6A1P12109 RBPJP5-201ENST00000449433 1447 ntBASIC7.09□□□□□ -1.28
COL6A1P12109 BX322650.1-201ENST00000332359 2143 ntBASIC7.09□□□□□ -1.28
COL6A1P12109 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
COL6A1P12109 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
COL6A1P12109 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
COL6A1P12109 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL6A1P12109 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
COL6A1P12109 AC119674.1-204ENST00000641348 1343 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL6A1P12109 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL6A1P12109 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL6A1P12109 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
COL6A1P12109 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL6A1P12109 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL6A1P12109 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL6A1P12109 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL6A1P12109 SNORA21-201ENST00000362423 132 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 SNORD16-201ENST00000362803 99 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 RNU6-697P-201ENST00000363348 107 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 SNORD116-2-201ENST00000384274 95 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 SNORD116-6-201ENST00000384711 96 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC7.08□□□□□ -1.28
COL6A1P12109 HIGD1AP15-201ENST00000416198 280 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AL513325.1-201ENST00000417716 1034 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 NME1P1-201ENST00000420914 382 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AJ239321.1-201ENST00000424255 564 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AC092648.1-201ENST00000425870 423 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC7.08□□□□□ -1.28
COL6A1P12109 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC7.08□□□□□ -1.28
COL6A1P12109 AL390879.1-201ENST00000439143 386 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AC064862.4-201ENST00000442180 334 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC7.08□□□□□ -1.28
COL6A1P12109 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC7.08□□□□□ -1.28
COL6A1P12109 AP006222.1-205ENST00000450734 457 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 RPL7P61-201ENST00000451721 751 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 RPL23AP64-201ENST00000469465 435 ntBASIC7.08□□□□□ -1.28
COL6A1P12109 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC7.08□□□□□ -1.28
COL6A1P12109 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC7.08□□□□□ -1.28
COL6A1P12109 NPM1P35-201ENST00000533043 868 ntBASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms