Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZNF603P-201ENST00000405613 487 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RN7SKP89-201ENST00000410774 242 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC023141.10-201ENST00000415634 200 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 VDAC1P10-201ENST00000416715 891 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RAC1P4-201ENST00000419413 579 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC062016.2-201ENST00000420950 676 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AL022100.1-202ENST00000421214 548 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RBM22P7-201ENST00000421321 280 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 DYNLL1P7-201ENST00000429273 258 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 LINC00160-201ENST00000430635 693 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC069154.1-201ENST00000432914 542 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MTATP6P23-201ENST00000440153 476 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MTND2P20-201ENST00000440805 661 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AQP4-203ENST00000440832 1169 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AL831737.1-201ENST00000441288 271 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC244021.2-201ENST00000445260 529 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AL592447.1-201ENST00000447592 540 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 NPM1P39-201ENST00000449818 867 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 ST13P21-201ENST00000453250 1098 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 OR9M1P-201ENST00000459641 921 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AL603882.1-201ENST00000463059 681 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC005550.2-201ENST00000476382 318 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RN7SL153P-201ENST00000486501 292 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC107956.2-201ENST00000496042 454 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 IGKV1-39-201ENST00000498574 398 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MTCYBP17-201ENST00000503579 789 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 SNX5P1-201ENST00000505757 1041 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MTND2P33-201ENST00000506452 1031 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC008868.1-201ENST00000509786 737 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC233724.10-201ENST00000510454 409 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 NRON-201ENST00000517270 370 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 IGLVIV-64-201ENST00000518581 301 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 IGLV10-67-201ENST00000519446 325 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 DACT3-AS1-202ENST00000525008 496 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC073571.1-201ENST00000549103 475 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 CCNG2P1-201ENST00000549521 1000 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 ZNF519P3-201ENST00000557158 1032 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC093519.1-201ENST00000566109 298 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC092142.1-202ENST00000567021 829 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MRPL45P2-203ENST00000573318 473 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RBM4-213ENST00000578778 582 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MIR3689C-201ENST00000581239 72 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AP006587.6-201ENST00000582128 1091 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 KPNA2P3-201ENST00000584190 848 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 ZNF561-AS1-208ENST00000592851 782 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AL021918.1-201ENST00000603933 236 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 HNRNPA1P67-201ENST00000604027 926 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC091768.1-201ENST00000609258 930 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC024941.1-201ENST00000612250 334 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 MIAT_exon1.1-201ENST00000617016 135 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC048341.3-201ENST00000619323 491 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 SPINK6-203ENST00000621437 605 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AP003068.4-201ENST00000623192 802 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC018692.2-201ENST00000624130 348 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC129908.1-201ENST00000624553 648 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC074198.1-201ENST00000506546 1397 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 AC114786.1-201ENST00000512892 1415 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 UBR1-202ENST00000546274 3332 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 CD40LG-201ENST00000370628 1720 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 C14orf37-201ENST00000267485 6495 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 OFD1P17-201ENST00000437639 3018 ntBASIC5.88□□□□□ -1.47
CCDC140Q96MF4 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC140Q96MF4 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AP2B1-217ENST00000618940 3415 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC140Q96MF4 AP000766.1-201ENST00000561746 4140 ntBASIC5.87□□□□□ -1.47
CCDC140Q96MF4 LINC02535-201ENST00000455071 2513 ntTSL 2 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms