Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 FAM183DP-201ENST00000421987 399 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC099677.3-201ENST00000427081 395 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 FTLP8-201ENST00000446770 267 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 OR52Y1P-201ENST00000452418 828 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 RSU1P1-201ENST00000453416 441 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 PFN1P6-201ENST00000476786 399 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC044810.1-201ENST00000480271 711 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC098583.1-201ENST00000480875 255 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC093815.1-201ENST00000508637 280 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 HMGN1P17-201ENST00000513734 295 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 MIR4701-201ENST00000583094 63 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC092681.3-201ENST00000609463 678 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC022960.2-201ENST00000616300 666 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 AL445670.1-201ENST00000618889 801 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 AL512652.1-201ENST00000619006 500 ntBASIC5.93□□□□□ -1.46
VPS39Q96JC1 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.93□□□□□ -1.46
VPS39Q96JC1 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS39Q96JC1 AC015799.1-201ENST00000622996 3122 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AC068870.3-201ENST00000625077 2536 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 MIR137-201ENST00000385223 102 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AC078899.1-201ENST00000521432 1185 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 AC110056.1-201ENST00000525759 911 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 AP001000.1-201ENST00000526843 742 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AP002884.5-201ENST00000595053 1132 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 AL135999.3-201ENST00000610501 812 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 SSXP3-201ENST00000442971 1300 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VPS39Q96JC1 RBMY1HP-201ENST00000382759 1389 ntBASIC5.92□□□□□ -1.46
VPS39Q96JC1 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS39Q96JC1 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC015689.2-201ENST00000528172 1738 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 AC125336.1-201ENST00000508893 2827 ntBASIC5.91□□□□□ -1.46
VPS39Q96JC1 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS39Q96JC1 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
VPS39Q96JC1 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms