Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TMSB4XP2-201ENST00000335179 210 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 AL121886.1-201ENST00000358609 435 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 MIR1275-201ENST00000408770 80 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 RPL5P2-201ENST00000429598 854 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 VN1R110P-201ENST00000438988 971 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 PPIAP27-201ENST00000453800 265 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 RPS23P2-201ENST00000463671 415 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 RN7SL197P-201ENST00000466981 299 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXA1P55317 RPL32P33-201ENST00000487023 394 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 RBBP4P1-201ENST00000502424 1276 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 GAPDHP71-201ENST00000511530 1003 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 SETP21-201ENST00000514799 892 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 SCARNA18.1-201ENST00000516330 83 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 WBP1LP3-201ENST00000523033 208 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 PCNAP4-201ENST00000532690 730 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.51□□□□□ -1.53
FOXA1P55317 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXA1P55317 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
FOXA1P55317 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.51□□□□□ -1.53
FOXA1P55317 AP001437.1-201ENST00000608783 456 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.51□□□□□ -1.53
FOXA1P55317 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
FOXA1P55317 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXA1P55317 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXA1P55317 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXA1P55317 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXA1P55317 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.5□□□□□ -1.53
FOXA1P55317 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
FOXA1P55317 AC090181.3-201ENST00000624777 1514 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
FOXA1P55317 AL159987.1-201ENST00000347911 293 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 RNA5SP273-201ENST00000362484 113 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.5□□□□□ -1.53
FOXA1P55317 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 AL354766.1-201ENST00000423396 542 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 TUBB4BP6-201ENST00000437576 479 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.5□□□□□ -1.53
FOXA1P55317 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.5□□□□□ -1.53
FOXA1P55317 RN7SKP253-201ENST00000516424 309 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 IGLV3-24-201ENST00000517477 197 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.5□□□□□ -1.53
FOXA1P55317 HSPE1P2-201ENST00000554777 306 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 AGGF1P7-201ENST00000562369 913 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.5□□□□□ -1.53
FOXA1P55317 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.5□□□□□ -1.53
FOXA1P55317 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.5□□□□□ -1.53
FOXA1P55317 AC007786.3-201ENST00000615154 596 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
FOXA1P55317 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
FOXA1P55317 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.5□□□□□ -1.53
FOXA1P55317 PDZK1P1-202ENST00000425209 1350 ntBASIC5.5□□□□□ -1.53
FOXA1P55317 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.5□□□□□ -1.53
FOXA1P55317 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
FOXA1P55317 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
FOXA1P55317 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
FOXA1P55317 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.5□□□□□ -1.53
FOXA1P55317 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
FOXA1P55317 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
FOXA1P55317 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
FOXA1P55317 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.49□□□□□ -1.53
FOXA1P55317 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.49□□□□□ -1.53
FOXA1P55317 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
FOXA1P55317 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
FOXA1P55317 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.49□□□□□ -1.53
FOXA1P55317 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 BX323845.3-201ENST00000428215 527 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.49□□□□□ -1.53
FOXA1P55317 NPM1P18-201ENST00000434232 732 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms