Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC8.09□□□□□ -1.12
MSH6P52701 TAS2R6P-201ENST00000605022 826 ntBASIC8.09□□□□□ -1.12
MSH6P52701 PACRG-210ENST00000611387 279 ntTSL 5 BASIC8.09□□□□□ -1.12
MSH6P52701 uc_338.26-201ENST00000612659 160 ntBASIC8.09□□□□□ -1.12
MSH6P52701 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC8.09□□□□□ -1.12
MSH6P52701 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC8.09□□□□□ -1.12
MSH6P52701 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.12
MSH6P52701 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC8.09□□□□□ -1.12
MSH6P52701 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC8.08□□□□□ -1.12
MSH6P52701 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 AL161912.4-201ENST00000623889 2468 ntBASIC8.08□□□□□ -1.12
MSH6P52701 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 SALL4P7-201ENST00000555779 3120 ntBASIC8.08□□□□□ -1.12
MSH6P52701 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC8.08□□□□□ -1.12
MSH6P52701 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC8.08□□□□□ -1.12
MSH6P52701 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 AL159987.1-201ENST00000347911 293 ntBASIC8.08□□□□□ -1.12
MSH6P52701 RPL26P29-201ENST00000415623 438 ntBASIC8.08□□□□□ -1.12
MSH6P52701 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC8.08□□□□□ -1.12
MSH6P52701 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC8.08□□□□□ -1.12
MSH6P52701 AC019185.1-201ENST00000442718 389 ntBASIC8.08□□□□□ -1.12
MSH6P52701 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 AC006463.2-201ENST00000473326 348 ntBASIC8.08□□□□□ -1.12
MSH6P52701 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC8.08□□□□□ -1.12
MSH6P52701 AC126177.5-201ENST00000549599 178 ntBASIC8.08□□□□□ -1.12
MSH6P52701 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC8.08□□□□□ -1.12
MSH6P52701 MIR4330-201ENST00000579077 105 ntBASIC8.08□□□□□ -1.12
MSH6P52701 AC063977.5-201ENST00000601044 974 ntBASIC8.08□□□□□ -1.12
MSH6P52701 AF230666.2-201ENST00000602328 725 ntBASIC8.08□□□□□ -1.12
MSH6P52701 CYCSP1-201ENST00000604815 315 ntBASIC8.08□□□□□ -1.12
MSH6P52701 AP002505.2-201ENST00000623585 696 ntBASIC8.08□□□□□ -1.12
MSH6P52701 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC8.08□□□□□ -1.12
MSH6P52701 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC8.08□□□□□ -1.12
MSH6P52701 AC003992.1-201ENST00000635364 557 ntBASIC8.08□□□□□ -1.12
MSH6P52701 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSH6P52701 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
MSH6P52701 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC8.07□□□□□ -1.12
MSH6P52701 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC8.07□□□□□ -1.12
MSH6P52701 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 RN7SKP28-201ENST00000364770 305 ntBASIC8.07□□□□□ -1.12
MSH6P52701 PA2G4P6-201ENST00000438325 1197 ntBASIC8.07□□□□□ -1.12
MSH6P52701 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC8.07□□□□□ -1.12
MSH6P52701 AC021678.3-201ENST00000517893 476 ntBASIC8.07□□□□□ -1.12
MSH6P52701 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC8.07□□□□□ -1.12
MSH6P52701 IGHV1-14-201ENST00000523391 241 ntBASIC8.07□□□□□ -1.12
MSH6P52701 MIR378J-201ENST00000611988 109 ntBASIC8.07□□□□□ -1.12
MSH6P52701 AC009163.6-201ENST00000612367 342 ntBASIC8.07□□□□□ -1.12
MSH6P52701 AC132068.1-201ENST00000623805 459 ntBASIC8.07□□□□□ -1.12
MSH6P52701 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC8.07□□□□□ -1.12
MSH6P52701 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
MSH6P52701 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSH6P52701 IARS-213ENST00000627121 4587 ntTSL 5 BASIC8.07□□□□□ -1.12
MSH6P52701 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC8.07□□□□□ -1.12
MSH6P52701 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC8.06□□□□□ -1.12
MSH6P52701 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSH6P52701 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC8.06□□□□□ -1.12
MSH6P52701 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC8.06□□□□□ -1.12
MSH6P52701 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC8.06□□□□□ -1.12
MSH6P52701 AL359195.2-201ENST00000623657 4412 ntBASIC8.06□□□□□ -1.12
MSH6P52701 AC008957.3-201ENST00000624112 2242 ntBASIC8.06□□□□□ -1.12
MSH6P52701 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSH6P52701 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC8.06□□□□□ -1.12
MSH6P52701 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSH6P52701 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSH6P52701 FAM32BP-201ENST00000344033 333 ntBASIC8.06□□□□□ -1.12
MSH6P52701 HIST1H3PS1-201ENST00000404612 417 ntBASIC8.06□□□□□ -1.12
MSH6P52701 AL133325.1-201ENST00000421090 382 ntBASIC8.06□□□□□ -1.12
MSH6P52701 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC8.06□□□□□ -1.12
MSH6P52701 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC8.06□□□□□ -1.12
MSH6P52701 SDC4P-201ENST00000453285 601 ntBASIC8.06□□□□□ -1.12
MSH6P52701 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC8.06□□□□□ -1.12
MSH6P52701 RPS18P6-201ENST00000476880 458 ntBASIC8.06□□□□□ -1.12
MSH6P52701 AC096754.1-201ENST00000508904 818 ntBASIC8.06□□□□□ -1.12
MSH6P52701 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC8.06□□□□□ -1.12
MSH6P52701 OR7E158P-201ENST00000524483 910 ntBASIC8.06□□□□□ -1.12
MSH6P52701 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC8.06□□□□□ -1.12
MSH6P52701 AC011840.5-201ENST00000582125 771 ntBASIC8.06□□□□□ -1.12
MSH6P52701 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC8.06□□□□□ -1.12
MSH6P52701 IGLCOR22-2-201ENST00000605398 313 ntBASIC8.06□□□□□ -1.12
MSH6P52701 uc_338.18-201ENST00000615451 175 ntBASIC8.06□□□□□ -1.12
MSH6P52701 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC8.06□□□□□ -1.12
MSH6P52701 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSH6P52701 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
MSH6P52701 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
MSH6P52701 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC8.06□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms