Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SOX3P41225 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX3P41225 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SOX3P41225 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX3P41225 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.56□□□□□ -1.52
SOX3P41225 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 OR10R3P-201ENST00000361688 942 ntBASIC5.56□□□□□ -1.52
SOX3P41225 RNA5SP273-201ENST00000362484 113 ntBASIC5.56□□□□□ -1.52
SOX3P41225 SNORD1C-201ENST00000363315 78 ntBASIC5.56□□□□□ -1.52
SOX3P41225 RN7SKP15-201ENST00000364742 309 ntBASIC5.56□□□□□ -1.52
SOX3P41225 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SOX3P41225 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AL096711.1-201ENST00000404780 554 ntBASIC5.56□□□□□ -1.52
SOX3P41225 SNRPEP6-201ENST00000407465 277 ntBASIC5.56□□□□□ -1.52
SOX3P41225 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.56□□□□□ -1.52
SOX3P41225 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.56□□□□□ -1.52
SOX3P41225 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX3P41225 AL354868.1-201ENST00000417077 482 ntBASIC5.56□□□□□ -1.52
SOX3P41225 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.56□□□□□ -1.52
SOX3P41225 RPL12P11-201ENST00000439970 501 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX3P41225 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
SOX3P41225 RPL23AP60-201ENST00000450011 454 ntBASIC5.56□□□□□ -1.52
SOX3P41225 RAB28P2-201ENST00000454299 641 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX3P41225 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX3P41225 AC002075.1-201ENST00000457396 676 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AC083795.1-201ENST00000491760 320 ntBASIC5.56□□□□□ -1.52
SOX3P41225 Y_RNA.667-201ENST00000516212 107 ntBASIC5.56□□□□□ -1.52
SOX3P41225 SCARNA18.1-201ENST00000516330 83 ntBASIC5.56□□□□□ -1.52
SOX3P41225 RNU6-551P-201ENST00000516661 103 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AP004609.2-201ENST00000532177 190 ntBASIC5.56□□□□□ -1.52
SOX3P41225 NANOGNBP2-201ENST00000544753 553 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AC068305.2-201ENST00000550567 1205 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.56□□□□□ -1.52
SOX3P41225 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX3P41225 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX3P41225 MIR6809-201ENST00000612189 116 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AC020658.4-201ENST00000613987 684 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AP003400.2-201ENST00000624036 666 ntBASIC5.56□□□□□ -1.52
SOX3P41225 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 MTCO1P8-201ENST00000416914 1523 ntBASIC5.56□□□□□ -1.52
SOX3P41225 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 AC004656.1-201ENST00000568479 4951 ntBASIC5.56□□□□□ -1.52
SOX3P41225 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.56□□□□□ -1.52
SOX3P41225 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX3P41225 GNL2P1-201ENST00000451274 2190 ntBASIC5.56□□□□□ -1.52
SOX3P41225 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
SOX3P41225 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SOX3P41225 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
SOX3P41225 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
SOX3P41225 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
SOX3P41225 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SOX3P41225 AF287957.1-201ENST00000607368 1595 ntBASIC5.55□□□□□ -1.52
SOX3P41225 CASC19-260ENST00000641828 2001 ntBASIC5.55□□□□□ -1.52
SOX3P41225 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX3P41225 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
SOX3P41225 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX3P41225 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SOX3P41225 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.55□□□□□ -1.52
SOX3P41225 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
SOX3P41225 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SOX3P41225 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX3P41225 TMSB4XP2-201ENST00000335179 210 ntBASIC5.55□□□□□ -1.52
SOX3P41225 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SOX3P41225 LYPLA1P3-201ENST00000402650 695 ntBASIC5.55□□□□□ -1.52
SOX3P41225 HMGN1P20-201ENST00000411849 300 ntBASIC5.55□□□□□ -1.52
SOX3P41225 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.55□□□□□ -1.52
SOX3P41225 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.55□□□□□ -1.52
SOX3P41225 IPPKP1-201ENST00000422501 768 ntBASIC5.55□□□□□ -1.52
SOX3P41225 GAPDHP75-201ENST00000433910 943 ntBASIC5.55□□□□□ -1.52
SOX3P41225 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX3P41225 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX3P41225 ACA64.1-201ENST00000459171 127 ntBASIC5.55□□□□□ -1.52
SOX3P41225 AC093719.1-201ENST00000480427 441 ntBASIC5.55□□□□□ -1.52
SOX3P41225 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.55□□□□□ -1.52
SOX3P41225 RN7SL193P-201ENST00000491708 276 ntBASIC5.55□□□□□ -1.52
SOX3P41225 AC090568.1-201ENST00000509499 856 ntBASIC5.55□□□□□ -1.52
SOX3P41225 CYP4F27P-201ENST00000514557 494 ntBASIC5.55□□□□□ -1.52
SOX3P41225 RNA5SP438-201ENST00000516561 112 ntBASIC5.55□□□□□ -1.52
SOX3P41225 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SOX3P41225 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.55□□□□□ -1.52
SOX3P41225 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.55□□□□□ -1.52
SOX3P41225 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX3P41225 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX3P41225 AC005244.1-201ENST00000582566 339 ntBASIC5.55□□□□□ -1.52
SOX3P41225 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.55□□□□□ -1.52
SOX3P41225 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.55□□□□□ -1.52
SOX3P41225 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX3P41225 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX3P41225 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX3P41225 AC005899.7-201ENST00000618199 588 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms